barSeed - Barley Seed Development Database

Probe CUST_28553_PI390587928

Source Contig U35_24046

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28553_PI390587928	Hv_44K_v2	ATCGCTGAAAAGTCCTCATATGATATTGCGTCTTTTTCAGTATATTATGGACGTTCCAAT	921	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.569	2.313	1.728	0.782	0.067	0.023
Raw	1086.852	2662.014	1625.197	1218.480	34.555	11.878

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44076.1	1400	2e-24	1291 - 1350	100	60 / 60	plus	None
JLOC1	JLOC1_28533.1	1360	1e-22	1268 - 1326	98	58 / 59	plus
Harvest35	U35_24046	1004	3e-25	922 - 981	100	60 / 60	plus

Contig Sequence (1004 bp)

>U35_24046 1004 Hv_44K_v2
GGCCGGACTTCGGCTCAGCCCACGGGTTCACCTCCAAGAACGATTCGAGCCGTACCCCAA
CTTGTCTGACAAGGGTCCGCGAAGAGCTTGAGTTGCTTGGGTATCGTGACGGCAAGACCC
TTTTCGGAGCTCCCTATGACCCACGGCACGCTCCGCCGCTGCCGGGGCAACCATCTAAGG
TGTACTCCGACTACTTTGCTCGTGTCAAGGACCTGGTGGAGCGTGCAAGCAGGAAGAATC
AAAACAGGCCGGTCATCCTCGTTGCGCACAGCTTTGGTGGCAAGGTCATCCTCGGGTTCG
TCAACAGGACTCCCATGCCATGGAGGAAGAAATTCATCAAGCACCTGGTCTTTGTATCGC
CCACACCTCCAGAAGGCTTCATGGGGGTGCTCACGAACCTCGCCTCGGGACCATCCTTCC
TCGTCCCATCGGTTCCGCCACTGCTTCTGCGGCCGATGTGGAGAACCTTTGCGAGCACCC
TTTTATCCCTCCCATCTCCTATGGCATTTGGTCACAGGCCAATCGTGATCACCAAACACA
GGAACTACTCGGCGTATGACTACAAGGACTTCCTCACGACACTCGGTTTGAACACCCAGA
TTGTGCAACGAGTGCTTTCGATGAAGTTGAGAATTGACCCACCAATGGTGCCGACGACGT
ACCTCAACGGTGTCGGCGTCAAAACGCCAGAGCAGGTGGTGTACCGGGACGGTAACTTTG
ATGTGCCACCCGAGAAGGTATATGGCGATGGAGACGGGACCATGAATTTGTTTAGCGTGC
TTGCGTTTGTGAAGGAGCTGAGTAGGCAACAACAAGTTGACATACCCTTCAAGTTCATCG
AGATTGCTAATGCTACACACTCCGATATTGTTGTTCAGGAGCATTCGCTCAAGAAGGTCA
TGGATGTAATTCTAGAAGCAAATCGCTGAAAAGTCCTCATATGATATTGCGTCTTTTTCA
GTATATTATGGACGTTCCAATATGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37700.1	436	1e-90	protein\|lecithin:cholesterol acyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g19520.1	442	4e-60
Arabidopsis v10	None