barSeed - Barley Seed Development Database

Probe CUST_28549_PI390587928

Source Contig U35_50311

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28549_PI390587928	Hv_44K_v2	AGCTGAAAATCCACTCTCTAAACCAAAGAGCTTCCCAAGTTTTAAGGCTGCATGGTATTG	270	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47329.1	223	2e-24	160 - 219	100	60 / 60	minus	ABC41789
Harvest21	ABC52397	684	3e-25	271 - 330	100	60 / 60	plus
Harvest35	U35_50311	684	3e-25	271 - 330	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_50311 684 Hv_44K_v2
AAGAACTACAATCTGGCTCTTGCTTCGAGCCTAAAGCTCCCTCAGTCCCTCCCACCCCCG
GAGTAGACAACGACCGGCCGATCGACCCCCAAACGGCCACTCTCGATTCGATCCGCTCCA
CTGGGACGGTGCTCTCGTCGCCTCCCTCACTCTGTCCGGGCGGATTTGTGATTTGCCCAG
TGAATATGGATGGGAACAACAGAGGAGGCGGACATTCTGAAGTGTTAAAGAACTACAATC
TGGGCAAAACATTAGGCCTAGGCACCCGGGAGCTGAAAATCCACTCTCTAAACCAAAGAG
CTTCCCAAGTTTTAAGGCTGCATGGTATTGGTTCGTCATATAGTATATGCTTCAGGTGTT
ACAATTCGCATGGATGGTATATATATGCTGTCTGTTTGGCTCTCAAATTTTTTTCTACAG
CTTTACAAGACCAAGGATGACAAGTACCTGCTAGATATTCAGAGAGTTACCGGACCTCAG
CTCCTTTTCCTGGAATTTTGTGGGGCGTTCCTTACCAACCTTAGGGTTCTATAATGCTTG
TTATGGTTGAGTGGAGAATATCAGAACTTATGACTGTCCCGTATGTGTGGTGCGGTTCAT
CGCCGCAATAGTGAATAAGTGATGTTGTGTAAATATATAGGCGGCGGCGTGTTTCATCTT
CCTTCTACCCAGTCCCTGACAGCG

Homology of Contig U35_50311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None