barSeed - Barley Seed Development Database

Probe CUST_28546_PI390587928

Source Contig U35_50315

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28546_PI390587928	Hv_44K_v2	TTATTCTTCACCCGGAAGGGAACATAATGGTTGACAGCCCAAGGTATACACCGAAACTAG	453	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44822.2	1316	2e-24	595 - 654	100	60 / 60	plus	ABC11149 ABC11460
MLOC	MLOC_44822.1	1360	2e-24	730 - 789	100	60 / 60	minus	ABC11149 ABC11460
JLOC1	JLOC1_29077.1	1488	8e-25	567 - 626	100	60 / 60	plus
Harvest21	ABC11150	1075	3e-25	454 - 513	100	60 / 60	plus
Harvest21	ABC11149	1310	3e-25	453 - 512	100	60 / 60	plus	ABC11149
Harvest35	U35_50315	650	3e-25	454 - 513	100	60 / 60	plus
Harvest35	U35_2947	1399	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_50315 650 Hv_44K_v2
CTCAGCTCGCCTCGGCTCATCTCACAGGCGTAGTGCACTAGAGACAGAAAACTTCACCCG
TCAATCGCCATGGCGCTCAACCTTCGCGCCGCCACATCCCTCGCCGCCCCGCCGGCTCAC
CTGCGTCCGCGCCGACGCGCCACCTCTGTCTCTGTGGTCCGCGCCACTGTGTCCCCTCCC
CCGGCGCTCGACAGCAGGCGGCGCCCGCAGAACGTGTCCGGCGACTTCTTCGTCGATCAC
CGGTGCATCGACTGCGCCACCTGCAGGTGGATGGCTCCGGAGGTGTTCAAGAGAGTCGAC
GGCCAGTCCGCCGTGGCGGCGCAACCCACCTCCGAGGAAACCAGGACATGCTCCAAGTGC
AGAACACGTTCCCTCTCCCCATCGACGATGATCTTCCCGGAGTTTACCTCTGTGGTTACC
ATTCTGAGAACTCATATGGAGCAACATCTTATCTTATTCTTCACCCGGAAGGGAACATAA
TGGTTGACAGCCCAAGGTATACACCGAAACTAGCGAACCAGCTTGAGAAGCTCGGCGGAG
TGCGTTACATGTTTCTGACTCACATTGATGATGTAGCGGATCATCGGAAATGGGCCGAGC
GGCTAAAGTGCGAGAGAATCATTCATTCAGGAGATGTGGAGGATATCACT

Homology of Contig U35_50315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58270.1	325	1e-67	protein\|metallo-beta-lactamase family protein, putative, expressed
Brachypodium v1_2	Bradi3g60470.1	332	3e-72
Arabidopsis v10	AT4G33540.1	355	3e-52	metallo-beta-lactamase family protein \| chr4:16130882-16133678 FORWARD LENGTH=355