- Probe CUST_2853_PI390587928
- Source Contig U35_10839
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2853_PI390587928 | Hv_44K_v2 | CGTGGAAGAAAGGTCACGTTCTGTTTTCATCAATTCAAAGATAAATAAAGTAGAGTGTAC | 139 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.697 | 0.806 | 0.536 | 1.735 | 1.965 | 1.196 |
| Raw | 2.633 | 7.646 | 3.530 | 26.291 | 10.287 | 7.068 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_50136.1 | 746 | 2e-24 | 431 - 490 | 100 | 60 / 60 | plus | ABC26247 |
| JLOC1 | JLOC1_32021.1 | 272 | 5e-22 | 218 - 272 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC26247 | 222 | 3e-25 | 140 - 199 | 100 | 60 / 60 | plus | ABC26247 |
| Harvest35 | U35_10839 | 222 | 3e-25 | 140 - 199 | 100 | 60 / 60 | plus |
Contig Sequence (222 bp)
>U35_10839 222 Hv_44K_v2 CGCTGGAGGATCATCGCGGCGACGATCGAGACGGGTGCTCCGCCGCATCAGACCCTCCTC CTCTGCTCAACCTTCTCGTGTAGCCGGGTTCATGCAATCTGAATTTGGTGTCTAACGGAT CCATCTTATTGCCATTCATCGTGGAAGAAAGGTCACGTTCTGTTTTCATCAATTCAAAGA TAAATAAAGTAGAGTGTACTTATGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_10839 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |