barSeed - Barley Seed Development Database

Probe CUST_28536_PI390587928

Source Contig U35_12071

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28536_PI390587928	Hv_44K_v2	CATCGTTTGGACTAGATGATATTCTGAAAACGTATCAATTTGTGCTGATCTTTCGTTCAA	585	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.013	1.494	1.127	0.762	0.339	0.515
Raw	24.907	57.059	37.813	43.751	5.069	9.603

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66976.1	688	3e-22	530 - 588	98	58 / 59	plus	ABC21339
MLOC	AK373904	1590	9e-22	1533 - 1590	98	57 / 58	plus	ABC21339
JLOC1	JLOC1_44191.1	353	1e-22	142 - 200	98	58 / 59	plus
Harvest21	ABC21339	660	3e-25	16 - 75	100	60 / 60	minus	ABC21339
Harvest35	U35_12071	660	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_12071 660 Hv_44K_v2
GGGACCGCTTCAGCAAGTACCGCGTCGGGGAGATGCCGGAGGACGGGCAGCTCTGCATCG
CGACCGTGGAGGACCAGATGATGCAACTCTGGGTGCGTCGGGAGACCAGGTGGAGCGACA
ATGGGTGGCATCTTGAGAGGGAGATGAACCTTATCAAAGTGTACGACGCAGTGCCGGGCT
TGCCCAGGGACAGGAGGGCCAGGATGGCGAGCATCATGCTCACCGACATGGACGCCGGGC
GCACAGGGAAGCTCTTCATCCAGATGCTGGGCTGTGGCCGCTACTCGTTCGATCTCAAGA
CTTGCAAGCTGGAGCGCCTGGCGATGGAAGATGGCAAGGAGTACGGGGACCCCATCTTCG
CCTACTCCCTGGCATGGCCGCCTGCCTTCCTTGCTGAAGCGTAATGGCTTGACGAATTTG
GCCATTTGGCGGTGGCTACGTTCCGAGAGGTATCAACACATCTTCCATTTCTGGTCACTA
CTCACTACCGCGCTACTGCGATTTCCCCCTTCATTCAGCACGAAGGAAAGGCTATTTTCT
CTATGAGAATGTTATAAGCAATGTCGGCCACCATTGCTACCTGAGCATCGTTTGGACTAG
ATGATATTCTGAAAACGTATCAATTTGTGCTGATCTTTCGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_12071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g08620.1	409	2e-53	protein\|OsFBX309 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi2g40850.1	431	4e-56
Arabidopsis v10	None