barSeed - Barley Seed Development Database

Probe CUST_28534_PI390587928

Source Contig U35_12072

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28534_PI390587928	Hv_44K_v2	TTTTTTCGAGGCATATACAAAGTATCTAGTGGTTGACATTGTTGCGGACAATGATGATGA	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21047.5	2370	2e-24	640 - 699	100	60 / 60	plus	ABC14523
MLOC	MLOC_21047.3	2188	2e-24	652 - 711	100	60 / 60	plus	ABC14523
MLOC	MLOC_21047.6	1568	2e-24	562 - 621	100	60 / 60	plus	None
MLOC	MLOC_21047.1	2161	2e-24	583 - 642	100	60 / 60	plus	ABC14523
MLOC	MLOC_21047.2	2170	2e-24	583 - 642	100	60 / 60	plus	ABC14523
MLOC	MLOC_21047.4	2179	2e-24	652 - 711	100	60 / 60	plus	ABC14523
JLOC1	JLOC1_14602.3	2140	8e-25	563 - 622	100	60 / 60	plus
JLOC1	JLOC1_14602.2	2044	8e-25	411 - 470	100	60 / 60	plus
JLOC1	JLOC1_14602.1	2232	8e-25	590 - 649	100	60 / 60	plus
Harvest21	ABC21884	730	3e-25	668 - 727	100	60 / 60	plus
Harvest35	U35_12072	730	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (730 bp)

>U35_12072 730 Hv_44K_v2
GCTGAAATCAACCTGTACCTGATGCTCATGTACCTCTTATGAAATTTAAGTTCCACGGGA
TGGCAATTGACCTTCTCTATGCCAGTGTATCTCTTGCAGTAATACCACCGGACTTCGACA
TCTCTGAAGGGTCTGTGCTTTCTGGTGTTGACGAATCAACTGTTCGAAGTCTTAACGGGT
GCAGGGTGGCAGACCAAATTCTTCGACTTGTTCCAAATGTTGAGAACTTCCGGACAACAC
TCAGGTGCTTGAAGTACTGGGCAGAGAGAAGGGGCGTTTATTCCAATGTTACTGGTTTCC
TCGGGGGTGTCAACTGGGCCATATTGGTTGCTCGTATCTGCCAACTGTATCCTAATGCTG
TACCAAGTATGCTGGTCTCAAGATTCTTCCGAGTTTTTACACAGTGGCAGTGGCCGAATC
CAGTGATGCTTTGTGCCATTGAGAATGATGATCTTGGTTTTTCTGTATGGGATCCACGTA
AAAATCCTCGTGATAGATCTCATGTTATGCCTATCATTACTCCAGGCTATCCGTGCATGA
ACTCTAGCTACAATGTATCTTCTAGCACATTGAGGGTTATCATGGAGCAATTTAAGCTTG
GTAATAAGATTTGTCAGGAAATTGACCTTAATAAGGCTAGTTGGACTGCCTTGTTTGAGC
CTTTTAATTTTTTCGAGGCATATACAAAGTATCTAGTGGTTGACATTGTTGCGGACAATG
ATGATGATCT

Homology of Contig U35_12072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13400.2	611	9e-154	protein\|expressed protein
Brachypodium v1_2	Bradi3g08637.3	697	3e-152
Arabidopsis v10	AT2G25850.2	800	4e-132	\| Symbols: PAPS2 \| poly(A) polymerase 2 \| chr2:11026123-11030440 REVERSE LENGTH=800