barSeed - Barley Seed Development Database

Probe CUST_28516_PI390587928

Source Contig U35_50324

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28516_PI390587928	Hv_44K_v2	TCAAGGAACCAAGAACATGGTGATTTTTGCAGTTACACACATGACACATGACACACATAC	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360731	1096	2e-24	760 - 819	100	60 / 60	plus	ABC08034
JLOC1	JLOC1_3656.1	1418	8e-25	873 - 932	100	60 / 60	plus
Harvest21	ABC52411	647	3e-25	585 - 644	100	60 / 60	plus
Harvest21	ABC08034	1108	3e-25	790 - 849	100	60 / 60	plus	ABC08034
Harvest35	U35_50324	647	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_3166	1130	3e-25	790 - 849	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_50324 647 Hv_44K_v2
CGAAACCGAAGCCGCCGCCGGCAGCGGGGGAGGAGGAGGAGGGTGATGGCGTCGGGCCTG
GTGACGGAGGACGTGACGGTGGGGCGGCTGGTCCGGATCCGGCGCACGGTGATGCACATG
CTGCGCGACCGGGGGTACCTGGTGGTGGAGCACGAGCTGTCCATGACCCGCCGCGACTTC
CAGCGCAAGTACGGCGAGACCTTCCACCGCGAGGACATGCTCATCAACAAGTGCAAGAAG
AACGACCCCAACGACCAGAACCTCACCCCATTTGCGAAATCGTTCCTCCAAGAACTGGAG
CCAAAGATCCACTTGGAGGTTTTCCAGGACGCCGAAATGCTTATAAATATCAAGGAACAT
GTTCTTGTTCCGGAGCATCAAGTGCTTGCTAACGAGGAAAAGAAGACGTTATTGGCGCGG
TACACTTTAAAGGAAACTCAGCTACCAAGAATACAGATTACGGATCCCATTGCGAGGTAC
TATGGCCTCAAGCGAGGGCAGGTGGTGAAGATCATCAGGCCCAGCGAGACAGCCGGCAGA
TACGTCACATATCGCTATGTTGTATGACAGTACACAAAGTGAAATCAAGGAACCAAGAAC
ATGGTGATTTTTGCAGTTACACACATGACACATGACACACATACCCA

Homology of Contig U35_50324 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59140.1	211	1e-92	protein\|DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
Brachypodium v1_2	Bradi2g52777.2	211	1e-99
Arabidopsis v10	AT3G22320.1	205	9e-66	\| Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 \| Eukaryotic rpb5 RNA polymerase subunit family protein \| chr3:7891045-7892094 REVERSE LENGTH=205