barSeed - Barley Seed Development Database

Probe CUST_28505_PI390587928

Source Contig U35_12084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28505_PI390587928	Hv_44K_v2	ATGTTGAGCTGCTCAACAGTGGATTTCACAAGAAGAGAGTGCTGTCTTCGAAAGCATCTG	667	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.819	1.451	2.104	1.990	0.531	0.643
Raw	65.138	184.760	228.144	340.929	32.007	42.758

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360249	4481	2e-24	3955 - 4014	100	60 / 60	plus	ABC15119
MLOC	MLOC_67557.2	951	2e-24	459 - 518	100	60 / 60	plus	ABC15119
MLOC	MLOC_67557.1	1866	2e-24	1479 - 1538	100	60 / 60	plus	ABC15119
JLOC1	JLOC1_44624.1	946	8e-25	328 - 387	100	60 / 60	plus
Harvest21	ABC21461	870	3e-25	668 - 727	100	60 / 60	plus
Harvest35	U35_12084	870	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_12084 870 Hv_44K_v2
GGAAAAGTGTCTATTCTTAACGATGGATCCATTGTTGTTGAAGTTGGAGGCATTGAGTTA
GGCCAGGGGCTTTGGACAAAAGTGAAGCAGATGGCAGCATTTGGTCTTGGACAGTTGTGG
GCTGATCGAAGCCAAGACCTGTTAGAAAGAGTAAGAGTTATTCAAGCAGACACGTTAAGT
GTGGTACAGGGAGGGTGGACCACAGGGAGTACCACATCAGAATGCAGCTGTGAAGCAGTT
CGACTTGCCTGTAATATCATGGTTGACAGGCTGAAATCACTCAAGGAGCAATTGCAAGAA
AAACAAGGCAAAGTTTCATGGGATGGACTAATTTCACAGGCAAAAATGTCTGGTGTGGAT
TTGTCAGCAAGAGAATATTACATTCCTGGGGCTTCTGGTTCATACCTAAACTATGGAGCT
GCTGCTAGTGAGGTAGAGATTGATCTTCTCACGGGAGCAACTACAATTTTGCGTAGTGAT
CTTATATATGACTGTGGTCAGAGCTTAAATCCTGCAGTGGACATGGGGCAGGTGGAAGGG
GCCTTTGTTCAGGGAATTGGGTATTTCATGAGCGAGGAATATGTGACCAATTCGGATGGG
CTGATTGTCTCTGACGGGACTTGGACATACAAGATCCCAACCGTGGACACCATCCCTAAA
CAGTTTAATGTTGAGCTGCTCAACAGTGGATTTCACAAGAAGAGAGTGCTGTCTTCGAAA
GCATCTGGGGAGCCGCCTTTGCTACTTGCAGCTTCAGTTCACTGCGCAACAAGGGATGCA
ATTGCTGCAGCAAGGAAGGAACTACACTGTTCTGGGTCTGGATCATCTTCGCCTTCTTTC
TTTGAGTTGGAAGTTCCAGCAATCATGCCT

Homology of Contig U35_12084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57680.1	1357	5e-113	protein\|aldehyde oxidase, putative, expressed
Brachypodium v1_2	Bradi1g56667.3	1392	2e-163
Arabidopsis v10	AT1G04580.1	1337	5e-111	\| Symbols: AAO4, ATAO-4, ATAO2, AO4 \| aldehyde oxidase 4 \| chr1:1252212-1257510 REVERSE LENGTH=1337