barSeed - Barley Seed Development Database

Probe CUST_28502_PI390587928

Source Contig U35_12086

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28502_PI390587928	Hv_44K_v2	CAGGCGGCGTCCTCGTCGACATGACCACCTCCGACCCCACCCTCGCCGGCGAGATAGCCG	404	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361353	1239	7e-23	396 - 455	98	59 / 60	plus	ABC13107
JLOC1	JLOC1_17911.1	551	5e-22	3 - 60	98	57 / 58	minus
Harvest21	ABC23187	463	1e-24	405 - 463	100	59 / 59	plus
Harvest35	U35_12086	464	3e-25	405 - 464	100	60 / 60	plus

Contig Sequence (464 bp)

>U35_12086 464 Hv_44K_v2
CCCAATGCTCGCCTCCATCTCCCGATCTCTCGCTCGCCGCCGCCCGCGCCTCCCGCTTGC
CACCGCCACCGCCGCCGCCACAGCAGCCATGTCGTCGTCCGACACCGCCGGGAGCGTCGC
CGACCATCCGATCTCTCCGGATACCACACGTATCGGCTGGGTGGGGACGGGCGTCATGGG
CCAGTCCATGGCCGGCCACCTCCTCGCCGCCGGCTACGCGCTCACCGTATACAACCGCAC
GCCCTCCAAGGCCCAGGGCCTCGTCTCTAGCGGCGCCCGCCTCGTGGACAGCCCACGCGC
CGCCGCGGCCGCCGCTGACGTCATCTTCCTCATGGTCGGCTTCCCCTCCGACGTCCGCTC
CACGTCCCTCGACGCCTCCACGGGCGCTCTGGCCGGCCTCGCCCCAGGCGGCGTCCTCGT
CGACATGACCACCTCCGACCCCACCCTCGCCGGCGAGATAGCCG

Homology of Contig U35_12086 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g49440.1	317	1e-51
Arabidopsis v10	None