- Probe CUST_284_PI415269222
- Source Contig TA47589_4513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_284_PI415269222 | Hv_44K_v2 | GGACGAATTTTGGGTTTTACAATGGAGCAAATACTGGCCAAAATGAATTCGAGTACAAGG | 807 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376001 | 2173 | 2e-24 | 1229 - 1288 | 100 | 60 / 60 | plus | None |
| MLOC | AK372497 | 3251 | 2e-24 | 153 - 212 | 100 | 60 / 60 | minus | ABC04563 |
| MLOC | MLOC_62384.8 | 1441 | 2e-23 | 226 - 283 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.7 | 1552 | 2e-23 | 411 - 468 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.1 | 2213 | 2e-23 | 442 - 499 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.10 | 1250 | 2e-23 | 298 - 355 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.3 | 1402 | 2e-23 | 442 - 499 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.4 | 1393 | 2e-23 | 442 - 499 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.5 | 1335 | 2e-23 | 352 - 409 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.6 | 1327 | 2e-23 | 353 - 410 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.9 | 1358 | 2e-23 | 226 - 283 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_62384.2 | 1577 | 2e-23 | 446 - 503 | 100 | 58 / 58 | plus | None |
| JLOC1 | JLOC1_40827.4 | 1894 | 1e-23 | 359 - 416 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_40827.3 | 1913 | 1e-23 | 369 - 426 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_40827.2 | 1831 | 1e-23 | 383 - 440 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_40827.1 | 1921 | 1e-23 | 386 - 443 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC28288 | 679 | 3e-25 | 411 - 470 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15828 | 897 | 3e-25 | 799 - 858 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46489 | 607 | 4e-24 | 321 - 378 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_29109 | 679 | 3e-25 | 411 - 470 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7750 | 1169 | 4e-24 | 883 - 940 | 100 | 58 / 58 | plus |
Contig Sequence (867 bp)
>TA47589_4513 867 Hv_44K_v2 CGGCACGAGGGATCGTCGGCGGCGACGTGCACTACTTCCGCATCGTCCCCCAGTACTGGA AAGATCGCCTTTTAAGGGCTAAGGCACTAGGTCTGAACACAATTCAAACATATGTTCCTT GGAATTTGCACGAGCCAGAACCACAGAGCTGGGAATTCAAGGGTTTCGCTGACATTGAAT CGTACCTAAGGCTTGCTCAAGAATTAGAAATGCTCGTCATGCTTCGTGTAGGTCCATATA TTTGTGGAGAATGGGATTTAGGGGGATTTCCACCATGGTTGCTCACCATAGAGCCAACCC TTAAACTGCGATCATCAGACTCAACCTATCTTTCCTTGGTGGAGAGATGGTGGAGAGTCT TGCTCCCAAAAATAGCACCACTGTTATACGAGAATGGAGGTCCAATTATCATGGTGCAGA TTGAAAATGAATTTGGTTCATTTGGAGATGACAAGAATTACCTTCATTACCTTGTTCAAT TGGCCAGACAATATCTGGGGAATGACATTGTTCTGTATACTACTGATGGGGGCACTACTA ATACCTTAAAGAATGGAGCAATTCTTCAAGATGATGTCTTTGCAGCTGTTGATTTTTCTA CTGGTGATGATCCATGGCCAATATTCAGATTACAGAAGAAATACAACTTACCGGGAAAAT CAGCCCCTTTAAGTGCGGAATTTTATACCGGATGGCTAACACACTGGGGTGAGAGTATCG CAACCACAGCTGCCAGCAGCACAGCTAAAGCTCTTAAAAGTATTCTATGCCGCAATGGTT CTGCTGTACTCTATATGGCTCATGGAGGGACGAATTTTGGGTTTTACAATGGAGCAAATA CTGGCCAAAATGAATTCGAGTACAAGG
Homology of Contig TA47589_4513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g46200.2 | 589 | 1e-179 | protein|beta-galactosidase 8 precursor, putative, expressed |
| Brachypodium v1_2 | Bradi2g18440.3 | 671 | 0.0 | |
| Arabidopsis v10 | AT1G72990.1 | 697 | 3e-143 | | Symbols: BGAL17 | beta-galactosidase 17 | chr1:27457480-27462168 REVERSE LENGTH=697 |