- Probe CUST_28495_PI390587928
- Source Contig U35_24061
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28495_PI390587928 | Hv_44K_v2 | GTTGATTTTGGCCTAATTGTTGGGCGTCTTGCATGTTCCTTCCTAGCTGCCTCCTTTATA | 475 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.821 | 1.807 | 1.111 | 0.761 | 0.330 | 0.336 |
| Raw | 3438.900 | 5185.760 | 2865.637 | 3079.234 | 465.561 | 522.518 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4350.1 | 3074 | 7e-23 | 2929 - 2988 | 98 | 59 / 60 | plus | ABC23074 |
| MLOC | MLOC_4350.2 | 3286 | 7e-23 | 3139 - 3198 | 98 | 59 / 60 | plus | ABC23074 |
| JLOC1 | JLOC1_2691.1 | 3068 | 4e-23 | 2930 - 2989 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC23074 | 563 | 1e-23 | 29 - 88 | 98 | 59 / 60 | minus | ABC23074 |
| Harvest35 | U35_24061 | 566 | 3e-25 | 476 - 535 | 100 | 60 / 60 | plus |
Contig Sequence (566 bp)
>U35_24061 566 Hv_44K_v2 GAACCCAAGATCATTCAGGCAGTTCAAATCCAACGGGAAGGCACATCGTCCTGGGCCAGA TAACATCATTGACTTTGAGCTCCTTGCACACTATGAGATGTTATCGTTAGAAGAGCAGCT GGATATTGCGCAGCAGATTGGGACTACCCGCGCTCAGATCATTTCCAACTTGAGTGATAT TTCGCTGGGCACAAGTTTCCTGTGAATTGAAGTTTGAGCGATCATTTTGGATCCAAGACC TTGATACAGATGGAAGAGCTAGCGGCACACGGCGATTCTGCCGCTCAGCGACTCTTCGTA ACTCCGGTGACCTAGACCCCCAGGCGCCAGGCCTTCTTGTAAACATGACATCTGTATGAT AGGATTAAATGGTGTAACCTCTGCTGGCCAGTTTGATCTTTCTCGGCAAATTATAGCCAC CGTGATGCGTACATATTGGTTAACATTTGGAAGCGCACTGTAAATGGCCATGGTGGTTGA TTTTGGCCTAATTGTTGGGCGTCTTGCATGTTCCTTCCTAGCTGCCTCCTTTATAGCGAC TCTTTTTTTGTATGATAATACCTTTG
Homology of Contig U35_24061 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |