barSeed - Barley Seed Development Database

Probe CUST_28493_PI390587928

Source Contig U35_24063

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28493_PI390587928	Hv_44K_v2	ACAAGATCATATTCGTCCATGGCTTCTTCTGCTGCAGGCACGACGTGCTCAACGTCTCCC	388	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375264	1236	2e-24	317 - 376	100	60 / 60	plus	ABC21229
MLOC	MLOC_7730.1	724	6e-24	217 - 275	100	59 / 59	minus	None
MLOC	MLOC_7730.2	684	6e-24	215 - 273	100	59 / 59	minus	None
JLOC1	JLOC1_5102.1	1382	3e-24	369 - 427	100	59 / 59	plus
Harvest21	ABC46682	465	1e-24	262 - 320	100	59 / 59	plus
Harvest21	ABC32211	601	1e-23	303 - 362	98	59 / 60	plus
Harvest35	U35_24063	687	3e-25	389 - 448	100	60 / 60	plus
Harvest35	U35_46484	465	1e-24	262 - 320	100	59 / 59	plus

Contig Sequence (687 bp)

>U35_24063 687 Hv_44K_v2
TCGAGCACTGTTGGCCTGCTGGACGCAGCGCGCTATAAGCCTATAAGGGGCAGCGAGCAA
GCCAACAACGCACGTTGCTCCGCTCCGCGCTTCCAGACAAACCAGCCGATCGAGCCCGAT
CCCACGCAGCGGCCGCGAGCATCGAAATCTTAGGACCGTGCGAGCGCCGAGCGGCACGGC
GGAGCCATGCCGGCCGGCGCTGCCATGAAGCTGCCACTGGCTCTGCTCGTGTTCTTCTCG
GCGCTGCTCTACAGCCAGATTCAGCCGCCGCCTCAAAAGGTTCCCGGCTCGCCGGGCGGG
CCTCCGGTCACGGCGACCAGGACGAAGCTCAGGGACGGCAGGCACGTGGCCTACCTGGAA
TCCGGCGTCCCAAAGGAGCGGGCCAGGTACAAGATCATATTCGTCCATGGCTTCTTCTGC
TGCAGGCACGACGTGCTCAACGTCTCCCAGGGGCTGCTACAAGACCTTGGCATCTACCTG
CTGTCCTTTGACCGGCCGGGGTACTGCGAAAGCGACGCGCACCCGGCACGGACGGAGGAG
AGCATCGCCGTCGACATCGCCGAGCTCGCCGACAACCTGCAGCTGGGGCCCAGGTTCCAC
CTCATGGGCTTCTCCATGGGCGGCGAGATCATGTGGAGCTGCCTCAAGCACATCCCGCAC
AGGCTCTCCCGCGTGGCCATTCTCGCG

Homology of Contig U35_24063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33590.1	364	8e-81	protein\|hydrolase, alpha/beta fold family protein, putative, expressed
Brachypodium v1_2	Bradi5g09290.1	360	4e-85
Arabidopsis v10	AT1G74280.1	372	1e-57	alpha/beta-Hydrolases superfamily protein \| chr1:27929758-27931126 FORWARD LENGTH=372