barSeed - Barley Seed Development Database

Probe CUST_28486_PI390587928

Source Contig U35_24069

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28486_PI390587928	Hv_44K_v2	GCATGCTTCTTTTTTCCTGAATAATGATATGTTGACGACGATGTCAGTAACAAAGTAACA	386	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.974	4.792	1.463	0.389	0.070	0.018
Raw	1073.722	2888.110	715.232	306.050	20.138	4.103

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32185.1	308	2e-24	120 - 179	100	60 / 60	minus	None
Harvest21	ABC18787	451	3e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_24069	451	3e-25	387 - 446	100	60 / 60	plus

Contig Sequence (451 bp)

>U35_24069 451 Hv_44K_v2
CATTNAGCTGAATACACAAACCAACAGTAACCTTCGCTTAGCTGTTAGCTCTCTCTCAGC
ATTCCCAAACAACCTTACGAAGTCAAGATGAGGCCGTTCTACACGATGCTACTAGCCCTC
GCCATTGTGGTGCTCCGTTCAGATGTGGCGACGAAGGTGGTGACGGCGAACGGCGGTGGC
GCCGCTGCGACGGTGACCCCGATGGACTGCAAGGTGCTCCCGACCATCCCCGGAAAATGT
ACCCCCAAGAAGTGCATGGACGACTGCCAGGGTGGCATCGGCCGTACCTCGGTCGGCGAG
TGCGTTGCCGACGGATGCCGGTGCACGTATTGCACTGTGCCGCCTAGGGGTCGTCGGAAC
TGAACGGAGAACAGGCTGACGCTGCTGCATGCTTCTTTTTTCCTGAATAATGATATGTTG
ACGACGATGTCAGTAACAAAGTAACAATACC

Homology of Contig U35_24069 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None