barSeed - Barley Seed Development Database

Probe CUST_28482_PI390587928

Source Contig U35_50335

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28482_PI390587928	Hv_44K_v2	ATGTATATTATGAGATTGTACGTCTCAAGAGATAAATGTAGGAGTAGTACGGTATGGAAC	497	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.148	2.961	1.083	0.638	0.273	0.771
Raw	132.641	189.313	61.614	55.863	8.669	23.660

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360330	1570	2e-24	1421 - 1480	100	60 / 60	plus	None
MLOC	MLOC_76690.1	968	2e-24	255 - 314	100	60 / 60	minus	None
JLOC1	JLOC1_51143.1	745	8e-25	146 - 205	100	60 / 60	minus
Harvest21	ABC52426	560	3e-25	498 - 557	100	60 / 60	plus
Harvest35	U35_50335	560	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (560 bp)

>U35_50335 560 Hv_44K_v2
CTTCAATGGATCACGGATTGACCATTACTTGGAGTACGAACCTCATCCATCATCAACTAA
AAACTTGCATCATCTTTTTCAGATGATCAGGAAAGGCACTTTCGCAAGGTACGACTATGG
ATTGTGGGGAAACCTAAGGCGCTACGGTGGGCTGTCGCCCCCTCCGTTTGACCTAAGCAG
CATACCGGAATCACTGCCAATGTGGATGGGGTACGGTGGTCTTGATGAATTGGCCGATGT
CACTGATGTCGCGCGTACCATCAAAGAGCTGAGATCTACACCAGAGCTGCTATACATTGC
TGGCTATGGCCACATTGATTTCGTCATGAGCGTGAAGGCCAAAGATGATGTTTATGTCGA
CATGATGCGGTTCCTTCGCCTCAGGGCAAAAGGATCATTGCATAGTAGCTACTAGGACGT
GTCCTGCACGCGCGTGTGTGTATAATACATATGTACAGTCTTCTTTTCTGGATTTACGAC
TGACGGTGCCATTCTTTATGTATATTATGAGATTGTACGTCTCAAGAGATAAATGTAGGA
GTAGTACGGTATGGAACTGT

Homology of Contig U35_50335 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g01590.1	411	5e-74	protein\|triacylglycerol lipase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi4g08200.1	414	1e-77
Arabidopsis v10	AT2G15230.1	393	1e-56	\| Symbols: ATLIP1, LIP1 \| lipase 1 \| chr2:6612666-6615204 FORWARD LENGTH=393