barSeed - Barley Seed Development Database

Probe CUST_28474_PI390587928

Source Contig U35_12090

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28474_PI390587928	Hv_44K_v2	AACTTACTCAGTATCTGCATGAGGATGGATATACCACAACTGGCGTTGTTGGCTGTACTC	630	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369050	4231	2e-24	2054 - 2113	100	60 / 60	plus	ABC12582
MLOC	MLOC_38251.1	2476	2e-24	204 - 263	100	60 / 60	plus	ABC12582
JLOC1	JLOC1_24859.1	2498	8e-25	207 - 266	100	60 / 60	plus
Harvest21	ABC21447	690	3e-25	631 - 690	100	60 / 60	plus
Harvest35	U35_12090	690	3e-25	631 - 690	100	60 / 60	plus

Contig Sequence (690 bp)

>U35_12090 690 Hv_44K_v2
GGATGACCCTTTCTCAGAGCAAGAAATTATCACAGATGACTGCTGATAATGCTCAGTGGG
AGGACAGACAATTGTTGAGGTCTGGAGCTGTTAGAGGAACGGAGGTGCAGACAGAATTTG
ATGATGAGGATGAGCGTAAAGTAATACTTCTTGTTCATGATACGAAACCTCCGTTCCTGG
ATGGGCGAGTTGTATACACAAAGCAAGCAGAGCCTGTAATGCCACTGAAGGATCCAACAT
CTGACATGGCTATCATTGCACGAAAGGGTTCTGTTTTGGTTAGGGAAATTCGCGAAAAGC
AGAGCCAGAACAAGTCGCGGCAACGCTTCTGGGAGCTTGCTGGATCTAATCTTGGAAATA
TATTGGGTGTTGAGAAAACGACTGAACAGGTCGATGCAGATACTGCTGTTGTTGGTGATC
AAGGGGAGATTGATTTCAAGGAGGAAGCGAAGTTTTCGCAACACTTGAAGGAAAAAGCAG
AAGCTGTCAGTGATTTTGCAAAATCTAAATCTCTTTCTCAGCAAAGACAATATCTTCCTA
TATATACTGTCCGAGATGACCTGCTACAGGTTGTGCGTGAAAATCAAGTAGTTGTGGTCG
TTGGTGAAACTGGTTCTGGGAAGACCACTCAACTTACTCAGTATCTGCATGAGGATGGAT
ATACCACAACTGGCGTTGTTGGCTGTACTC

Homology of Contig U35_12090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32430.1	1318	6e-127	protein\|pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
Brachypodium v1_2	Bradi1g26607.1	1259	2e-137
Arabidopsis v10	AT5G13010.1	1255	1e-118	\| Symbols: EMB3011 \| RNA helicase family protein \| chr5:4122747-4128660 FORWARD LENGTH=1255