barSeed - Barley Seed Development Database

Probe CUST_28467_PI390587928

Source Contig U35_48023

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28467_PI390587928	Hv_44K_v2	TTTTTTAATAGCATGTATTGTGCCGAGAAGGTATTATTTGGTGCCCAGGCTTAGCTGCAT	-1	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.985	1.296	1.196	1.026	0.950	0.611
Raw	30.302	55.070	50.260	60.165	22.963	15.311

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC49741	642	2e-22	11 - 72	97	60 / 62	minus	ABC49741
Harvest35	U35_48023	642	2e-22	11 - 72	97	60 / 62	minus

Contig Sequence (642 bp)

>U35_48023 642 Hv_44K_v2
TTTATCGCGGATGCAGCTAAGCCTGGGCACCAAATAATANNCCTTCTCGGCACAATACAT
GCTATTAAAAAATTACTCACTAGTATGAACAGTAACAAAAATTCCAAGAGGTTGTCAATA
CGCAAATGAAAATACAGGTGGTCCGATGCTATTTTCCTGAGTGACTGAATCTAATAATGG
TTTTGTTATTCAGATTTGAAATGGACACAGCAATGCACAAACTGTTGGATGCTATAATAG
GTACATTCTATCAGCTAAAGCTAACCTCAAAGCACACATCTCAGTACACGCATTTCATAA
AAAGATCTTAAGTTACCGCAATTGATTTCTTCTCAATTTTACGAGGAAGGCTCTTCCACA
CCGTTTCTCGTATAGGACATTCTGCTAAAGAACCATTTTCCTTCAAGTAATTCCATTCTT
GTTTTAAGAATCTACAAATGAACATACATAATTTTAGAATACAATGAAAATAATACAGCA
GAAAACTGAGAAGGTGAGGATATCACGAAATTTTGACACCCTAGACAAGAAAAGTAATGG
CATGCCAAAATAATAGTGTCTACTTTCCAGAAGATATACTTCTAATGCAAAAATGTATGA
AATAAATGATACTTTAATAAAAAGGGCAGCCCGGTGCATGTA

Homology of Contig U35_48023 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None