barSeed - Barley Seed Development Database

Probe CUST_28464_PI390587928

Source Contig U35_12098

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28464_PI390587928	Hv_44K_v2	ACATGTCTCAGTCACACCTCCTTTCTTCTTTGAAAGAATTGTGTGGCAATCCAAAACCTG	472	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.773	1.177	1.297	0.798	0.543	0.425
Raw	133.674	119.240	134.238	114.397	31.728	26.624

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250721.1	1939	7e-23	300 - 359	98	59 / 60	plus	None
MLOC	MLOC_72360.1	730	7e-23	122 - 181	98	59 / 60	minus	None
JLOC1	JLOC1_48121.1	763	4e-23	582 - 641	98	59 / 60	plus
Harvest21	ABC21553	532	3e-25	473 - 532	100	60 / 60	plus
Harvest35	U35_12098	532	3e-25	473 - 532	100	60 / 60	plus

Contig Sequence (532 bp)

>U35_12098 532 Hv_44K_v2
GCCGTGCCGTCCCTTAGCGGCGTCACCGCCGGCGCCTCAATCCCACCCCTCATGCCCCTC
GCCCCCACCCACCACGGCCTCTCACGCGCGCTGCCGCCATCGCCGCTCCCGTTCTTCCTC
GTCGGGACATCGCGTTCCTGCCGTCTCCACCCCGTCCGCAGTTGAGTTTTGAGGTGCGCA
CCCGGCAGAACTTCTAGATTCGCCCCCGCGGCGGCGCCCGACATGTCGACGCCCTCCGAC
GGAGCCGCCCCCGCTGCCTCTACGTACTACGACGTCTTCGGTCCCGACGCTAAACCTGAT
GTTATTTTTAAGGAGGCCACGTCAGATTCCACATTGAATTTGCAGGATGTCCAGGGGCTA
GTAACTTGGGTTATTGGTGAAGGCATGCCGCCTTCATGGGTGTTTGTTAAAAACAAGCCT
CTTATCACAAAAGTTGTCCTTCTCTATGTTCCTGGCCTCAATGCAGCTTTATACATGTCT
CAGTCACACCTCCTTTCTTCTTTGAAAGAATTGTGTGGCAATCCAAAACCTG

Homology of Contig U35_12098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08740.1	608	6e-53	protein\|exonuclease, putative, expressed
Brachypodium v1_2	Bradi4g40790.1	559	9e-55
Arabidopsis v10	None