barSeed - Barley Seed Development Database

Probe CUST_28461_PI390587928

Source Contig U35_48029

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28461_PI390587928	Hv_44K_v2	ATGACTCTTTGCTTTGATCTTATTGATCTCCTCAGGGTGGACATTGGTATTCAAGATCCA	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67396.1	2460	2e-24	492 - 551	100	60 / 60	minus	ABC06868 ABC06869
MLOC	MLOC_67396.2	2115	2e-24	492 - 551	100	60 / 60	minus	ABC06868 ABC06869
JLOC1	JLOC1_44501.1	2236	8e-25	1565 - 1624	100	60 / 60	plus
Harvest21	ABC06869	717	3e-25	466 - 525	100	60 / 60	minus	ABC06869
Harvest35	U35_48029	631	3e-25	465 - 524	100	60 / 60	minus

Contig Sequence (631 bp)

>U35_48029 631 Hv_44K_v2
AGTAATCTTTACTCCGATGGAGAAGCTCGAGTGAAACTTGCGTGTCTCAGCACAACGAAC
AGGTCATAACGTTACACGTGTGCAACTTGAATTTTTCGTATCCTGTAGACTGGCGGAGAT
CAAAACAGGTCGTTTGCACAACAATATAGGTAGACAGCATCCTTCATGCTTAGCAGTGGT
GGGGAGGTCGTCGTTCTTTTCAATTGCAAGATAGTGCGTCAAGATCACGTGATGCGTGTT
CTAGCCTAATCGTTGTTGGATTTCTCCCTGTTACCAAAATGGTAGCTGCTTCTAGAATCG
CGCGACTCTGCATTCTAGATCTTGTGGACACTGTACCCAGCTTCTTCAGTATTCAAGCTG
TCGTTCCAGCTCTGAAACTCTGACCCTCCGAACTGTATTTCCTTAATGCCCAGATGATCC
GAATTTATGGTGGCTAATGAATTAAGCAGGACGTCCAAAAGCAATGGATCTTGAATACCA
ATGTCCACCCTGAGGAGATCAATAAGATCAAAGCAAAGAGTCATGGCTGATGTCAAATGC
AACTACATCTTGAACAAGTACAAGATGCATAATATTTTCTGTTTGAAAGATCTATCTTAA
TTGAAGGGACTAGATATTTCTGACTCAAGCA

Homology of Contig U35_48029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None