barSeed - Barley Seed Development Database

Probe CUST_28453_PI390587928

Source Contig U35_24077

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28453_PI390587928	Hv_44K_v2	TACTCAGGATGTGAAGATCAATACAGTAATAGCTGTCAAGGCAGGGGAAATCGTCCCGAT	332	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363365	3646	2e-24	779 - 838	100	60 / 60	plus	ABC06775
MLOC	MLOC_10131.2	1944	2e-24	78 - 137	100	60 / 60	plus	ABC06775
MLOC	MLOC_10131.1	4341	2e-24	1541 - 1600	100	60 / 60	plus	ABC06775
JLOC1	JLOC1_6603.1	3486	8e-25	386 - 445	100	60 / 60	plus
Harvest21	ABC22757	630	3e-25	89 - 148	100	60 / 60	plus
Harvest35	U35_24077	874	3e-25	333 - 392	100	60 / 60	plus

Contig Sequence (874 bp)

>U35_24077 874 Hv_44K_v2
ACGGCAGTTCATCACGCCTCTCCCTCTCCAATCCGTCTTGGACTCCTGGGTGGGATCGGC
ATCGGCACTGCTCGTGCTTCCCCCTCCGTCATTCTCCGGAGCGTCGCCGCGCTCCGGCGA
CGCACCATGGACGTCAACATACTCATGCTCATCGCAGTTGCTGGGGCCATAGCTCTCAAG
GACTACTCCGAGGCTGGGTTCATCGTCTTCCTCTTCACCATAGCCGAATGGCTCGAAACC
AGGGCGTGCGGCAAGGCCACTGCTGGGATGTCGTCACTAATGAGCATGGCACCACAAAAT
GCTGTCTTAGCAGAGACTGGACAAGTAGTTGCTACTCAGGATGTGAAGATCAATACAGTA
ATAGCTGTCAAGGCAGGGGAAATCGTCCCGATCGACGGTGTTGTTGTCGATGGTCGGAGT
GAGGTCGACGAGAGCACCCTCACGGGAGAGTCCTTCCCGGTGTCCAAGCAGGCAGACTCC
CAGGTCTGGGCTGGCACACTCAACATAGATGGTTACATTGCTGTGAGGACAACTGCTATG
GCTGACAACTCTGCGGTGGCCAAAATGGCAAGGCTGGTTGAAGAAGCCCAAAACAACCGA
TCCAGTACGCAGAGGCTGATCGACACTTGCGCCAAGTACTACACACCTGCTGTTATTTTC
ATGTCTGCAGCAGTGGCAGTGATCCCTGTGTGTCTCAAAGCACGCAACCTGAAACACTGG
TTTGAACTGGCCCTAGTTCTCCTGGTGAGTGCCTGTCCATGTGCTCTGGTGCTGTCGACA
CCCGTGGCAACCTTCTGCGCACTACTGAGGGCCGCGAGGACGGNGCTCCTCATCAAAGGA
GGGGATGTCCTTGAGTCCTTGGCCAGTATCAAAG

Homology of Contig U35_24077 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12900.1	1005	3e-109	protein\|cadmium/zinc-transporting ATPase, putative, expressed
Brachypodium v1_2	Bradi1g34140.1	1040	8e-144
Arabidopsis v10	AT4G30110.1	951	1e-98	\| Symbols: HMA2, ATHMA2 \| heavy metal atpase 2 \| chr4:14720253-14724577 REVERSE LENGTH=951