barSeed - Barley Seed Development Database

Probe CUST_28444_PI390587928

Source Contig U35_50345

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28444_PI390587928	Hv_44K_v2	TAGCAAAACACCATGTGAAGATTATGTGGAAGCGGCAGTGAAGCAGGCCATGACAATTCA	300	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369050	4231	2e-24	2508 - 2567	100	60 / 60	plus	ABC12582
MLOC	MLOC_38251.1	2476	2e-24	658 - 717	100	60 / 60	plus	ABC12582
JLOC1	JLOC1_24859.1	2498	8e-25	661 - 720	100	60 / 60	plus
Harvest21	ABC52440	454	3e-25	301 - 360	100	60 / 60	plus
Harvest35	U35_50345	454	3e-25	301 - 360	100	60 / 60	plus

Contig Sequence (454 bp)

>U35_50345 454 Hv_44K_v2
TGAGGATGTCACTTGTGCTAACACTATAATAAAGTATATGACAGATGGAGTGCTTCTTCG
TGAAACCTTGAAAGATGCCGACCTTGATAAATATCGTGTTATCGTCATGGATGAAGCACA
CGAAAGATCCCTCAATACTGATGTTTTGTTTGGCATACTGAAGAAGGTTGTTGCACGTCG
GCGGGATTTTAAGCTAATTGTCACATCTGCAACCCTAAATGCAGACAAATTCTCAAAGTT
CTTTGGAGGTGTGCCTGTATTTAACATTCCAGGCAGGACGTTTCCAGTTAATATCTTGTT
TAGCAAAACACCATGTGAAGATTATGTGGAAGCGGCAGTGAAGCAGGCCATGACAATTCA
CATAACGAGTGGCCCTGGCGACATCCTCATCTTCATGACCGGACAGGAAGAAATTGAGGC
TACTTGCTATGCTCTTGCTGAGCGCATGGAGCAG

Homology of Contig U35_50345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32430.1	1318	5e-91	protein\|pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
Brachypodium v1_2	Bradi3g03570.1	1068	9e-94
Arabidopsis v10	AT5G13010.1	1255	1e-85	\| Symbols: EMB3011 \| RNA helicase family protein \| chr5:4122747-4128660 FORWARD LENGTH=1255