barSeed - Barley Seed Development Database

Probe CUST_28443_PI390587928

Source Contig U35_36052

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28443_PI390587928	Hv_44K_v2	ATGACGGTAAAGAGCTCCCCAAAGTACTTGGAATGAACTCAGTTGACAGAGTACTGTTGG	201	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.604	1.065	1.484	1.069	0.538	0.560
Raw	675.538	653.677	854.812	929.279	174.569	197.275

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250416.1	2666	2e-24	1231 - 1290	100	60 / 60	plus	ABC08108 ABC29965
MLOC	MLOC_54574.1	1767	2e-24	1243 - 1302	100	60 / 60	minus	ABC08108 ABC29965
MLOC	MLOC_54574.2	2592	2e-24	1218 - 1277	100	60 / 60	minus	ABC08108 ABC29965
JLOC1	JLOC1_35127.1	2746	8e-25	1268 - 1327	100	60 / 60	plus
Harvest35	U35_36052	659	3e-25	202 - 261	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_36052 659 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTCAGAGCATGCTCGAGCGGCCGCTGATATGCCAGCTGCCC
CAGGTGGCAAGACCACATACATTGGAGCTCTGATGAAAAATACTGGAATAATCTATGCAA
ATGAGCTTAACGAGAAAAGGTTGCATGGACTGTTGGGTAACATACATCGCCTGGGTGTGA
CAAATACCATAGTTTGTAATTATGACGGTAAAGAGCTCCCCAAAGTACTTGGAATGAACT
CAGTTGACAGAGTACTGTTGGATGCGCCCTGCACAGGCACTGGAACCGTTTGGAAGGATG
CACAAATAAAAACATCTAAGGACATCGATGACATCAGGAATTGTGCTTTCGTACAAAAGC
AATCGCTCCTAGCTGCTATTGATTTGGTTGACGCCAACTCCAAAACCGGTGGTTACATTG
TTTACTCTACTTGTTCGATGATGATTCCAGAAAATGAAGCAGTCATCGACTATGCCCTTA
AAAAGAGAGATGTGAAGGTTGTTCCTTGTGGATTAGATTTTGGACGCCCAGGATTCATCC
GGTTCCGGGAGCATCGCTTCCATATGTCTTTAGACAAAACAAGGAGGTTTTATCCTCATG
TCAACAACATGGATGGCTTCTTCAGGCTCTTTAGATGACTCGGAAGATGCTGGAATTGT

Homology of Contig U35_36052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37860.1	700	2e-123	protein\|NOL1/NOP2/sun family protein, putative, expressed
Brachypodium v1_2	Bradi3g56470.1	774	2e-127
Arabidopsis v10	AT4G26600.1	671	9e-101	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:13419629-13423418 FORWARD LENGTH=671