barSeed - Barley Seed Development Database

Probe CUST_28417_PI390587928

Source Contig U35_16252

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28417_PI390587928	Hv_44K_v2	TTAGAACTATTACCAGCAGCTACTACCGAGGGGCCCATGGGATTATTATAGTCTACGATG	314	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.309	0.354	0.802	1.544	1.390	1.608
Raw	105.493	179.960	375.933	1124.017	360.525	453.694

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361131	1035	2e-24	364 - 423	100	60 / 60	plus	ABC04864 ABC04865 ABC04867
MLOC	MLOC_44211.4	532	2e-24	140 - 199	100	60 / 60	plus	ABC04864 ABC04865 ABC04867
MLOC	MLOC_44211.3	1566	2e-24	938 - 997	100	60 / 60	plus	ABC04864 ABC04865 ABC04867
MLOC	MLOC_44211.2	1977	2e-24	1295 - 1354	100	60 / 60	plus	ABC04864 ABC04865 ABC04867
JLOC1	JLOC1_28628.1	2396	8e-25	1575 - 1634	100	60 / 60	plus
Harvest21	ABC04866	656	3e-25	303 - 362	100	60 / 60	plus
Harvest21	ABC04865	987	3e-25	315 - 374	100	60 / 60	plus	ABC04865
Harvest35	U35_16252	987	3e-25	315 - 374	100	60 / 60	plus

Contig Sequence (987 bp)

>U35_16252 987 Hv_44K_v2
GGGGCAGCGGAATCGTCGTCGTCGATCCCCACCCCCACCCCCGCCACCCGTCCCGAGCCG
GCGCCCCGGAGATCGGAGCGCCCCGCGGCAGGATCCCGATCCCGCCATGAATCCGGAGTA
TGATTACCTCTTCAAGCTTTTGCTTATTGGAGACTCAGGCGTTGGCAAGTCATGTCTTCT
GTTAAGATTTGCGGATGATTCGTACCTGGATAGTTACATCAGTACTATTGGAGTTGATTT
TAAAATACGGACTGTGGAGCAGGATGGAAAGACTATCAAGCTGCAAATCTGGGACACTGC
TGGGCAAGAACGTTTTAGAACTATTACCAGCAGCTACTACCGAGGGGCCCATGGGATTAT
TATAGTCTACGATGTGACAGACCAAGATAGCTTCAACAATGTGAAGCAGTGGCTGAACGA
GATTGATCGCTATGCTAGTGAGAATGTGAACAAGCTTCTCGTGGGGAACAAATGTGATCT
CGCTGACAAAAGAGCTGTATCATATGAAACAGCAAAGGCATTTGCTGATGAGATTGGCAT
TCCATTCATGGAGACCAGTGCAAAGAACGCCCTGAATGTTGAACAGGCTTTCATGGCCAT
GGCTGCTTCGATCAAGGATAGGATGGCCAGCCAGCCAGCAGCAAACAACGCTCGCCCAGC
GACTGTACAGATCCGCGGGCAACCTGTCGACCAGAAGACCAGCTGCTGCTCTTCTTAGAA
AACCATGCAAACTTGATGATGCTCCATGACCTTTATACATGTTTTCTTATTTGTTTTTTA
CTTGTTATATCTTCGTTCTTTTCTTTCTAGTCTACCTTCCTTCTGAAATTGTGTAACTTG
GATGAATATATTATATTCGCAGTTGTTTTTATGGTTAACTTGGGATGACACTGCTGGTCG
TAGTACTCAATCTGTATCTATACGGTTCCATTGCTAACAATATTATATGATCTGGATTCT
TTTTCNNAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_16252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08450.1	253	5e-127	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g27157.1	204	8e-140
Arabidopsis v10	AT1G02130.1	203	6e-128	\| Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 \| RAS 5 \| chr1:400350-401788 REVERSE LENGTH=203