barSeed - Barley Seed Development Database

Probe CUST_28406_PI390587928

Source Contig U35_16258

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28406_PI390587928	Hv_44K_v2	GGTCATGTACTCGTCGTGCACACCGTCAGAATGTATTGGCTGTTTGAACTGTTCAAAAAA	1402	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7095.1	502	9e-22	106 - 160	100	55 / 55	plus	ABC46352
JLOC1	JLOC1_4682.1	1648	5e-22	1451 - 1505	100	55 / 55	plus
Harvest21	ABC05797	702	3e-25	41 - 100	100	60 / 60	minus
Harvest21	ABC46352	411	1e-23	12 - 71	98	59 / 60	minus	ABC46352
Harvest21	ABC05795	1461	1e-23	1345 - 1401	100	57 / 57	plus
Harvest35	U35_16258	1534	3e-25	1403 - 1462	100	60 / 60	plus

Contig Sequence (1534 bp)

>U35_16258 1534 Hv_44K_v2
CACGCGTCCGCGTTTTAGTATTTTCCTTTTCTCTCCCCTTCCTTCCGAGCCTCTCGTGTC
CTGACCTCCTCTTCCAAGTTCCAACGCGGCGGATCTACCCTCGACTGCCGCTGTGCCGCC
CCAGCGACACCACCGGCGCCTCCTCTCGCCACTCGGAGACGGGCGTCGTCGCCGCCGCCG
CCGCCGCCGCCACCGCCACCGTTCCCCTTCTTCCCCGCCCCCCCGGGAGATCCTGGCCAT
CGGGTCTCCTTCCTTCCTCTGAGGGCCAAAGTTTAGCTTGACGCCAACATGTCGTCGAAG
AAGATAGAGCTAGACCACAAGGACATGGTTCATGATTCTGCCATTGACTACTATGGGAAG
CGCCTTGCCACAGCTTCCTCGGACTCCACTGTGAAGATCACCAACATTGGAGGTGCATCT
GCCCCGTCCCAGCTCGTTGCCACCCTCACTGGCCACTATGGTCCTGTATGGCGTGTTGGA
TGGGCCCATCCCAAGTATGGTTCAATTCTGGCATCCTGCGGCTATGATGGCCGTGTGATA
GTCTGGAAGGAGGCTGCCACTGGGCAATGGTCTCAGCTCTATGTGTTTGACAACCACAAG
GCCTCAGTTAACTCAATTGCTTGGGCTCCATATGAACTTGGCCTTTGCCTTGCCTGTGGG
TCTTCTGATGGCACCATCTCTGTCATCTCCATGCGGCTTGATGCAGGAGGCTATGACGCT
GCAACCATCGAGCGGGCACACCCTGTTGGAGTGACAGCAGTCTCCTGGGCTCCAGCAGCA
CCCCTTGGGTCCATGGTTGGCTCAGGTCAGCTCGTCCACAAGCTCGTGTCTGGTGGCTTT
GATTGCGTCGTCAAGGTGTGGGAGTTTGTCAATGGTGGCTGGAAGCTGGAGAGCGCTATG
GTCTCCGACATGCACAAAGAATGCGTGAGGGATGTTTCATGGGCACCGGTCCTGGGCTTG
GCAAAGTCAACCATTGCCAGCGCGTCCCAAGATGGCAAGGTTGTCATCTGGACCAGTGGC
AAAGCAGGAGGCAAGTGGGAAGGAAAGCTCATGCGTGACTTCGAGGCCCCGGTGTGGAGG
GTGTCCTGGTCCTTGACGGGAAACATACTGTCGGTCGCTGCCGGCGAGGGCGACATAACT
CTGTGGAAGGAATCGTCGGACGGGCAGTGGGAGTCGCTGTGGACCAAGGCCTCGGAGGAG
CCGCCGCAGGAGCAGGCCGCGATCGAGGAGGCCATGCAGTAGGGGGGAGTCGGCGCCATG
TCCCCTGTCTCGATTTCAGACCAACGCCATGACTTGCTTTCACCTGCTGCCCTGATACTC
ATAGAGATACCCGTTTCCATTTTTTTTGCCGTTTGTTTCTGCATGGACAATGTCTGATTG
CACTGTTTAGTTTTACTTTACTGGTCATGTACTCGTCGTGCACACCGTCAGAATGTATTG
GCTGTTTGAACTGTTCAAAAAAAAAAAAAAAAAATCCTGCGCTAGCTGTTACCAGTGTTA
TGTATACTCGCGTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16258 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61630.2	302	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g02960.1	317	0.0
Arabidopsis v10	AT3G01340.1	302	1e-133	Transducin/WD40 repeat-like superfamily protein \| chr3:127557-128465 REVERSE LENGTH=302