barSeed - Barley Seed Development Database

Probe CUST_28404_PI390587928

Source Contig U35_16259

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28404_PI390587928	Hv_44K_v2	AGATAGAGCTAGACCACAAGGACATGGTTCATGATTCTGCCATTGACTACTATGGGAAGC	286	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.721	0.750	2.721	3.120	1.331	0.975
Raw	72.985	113.810	376.179	659.306	106.996	82.798

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363882	1368	2e-24	261 - 320	100	60 / 60	plus	ABC46352
MLOC	MLOC_7094.1	854	2e-24	370 - 429	100	60 / 60	plus	None
JLOC1	JLOC1_4682.1	1648	8e-25	349 - 408	100	60 / 60	plus
Harvest21	ABC05796	502	3e-25	220 - 279	100	60 / 60	plus
Harvest21	ABC05795	1461	3e-25	244 - 303	100	60 / 60	plus
Harvest35	U35_16259	531	3e-25	287 - 346	100	60 / 60	plus
Harvest35	U35_16258	1534	3e-25	302 - 361	100	60 / 60	plus

Contig Sequence (531 bp)

>U35_16259 531 Hv_44K_v2
CTCTCCCCTTCCTTCCGAGCCTCTCGTGTCCTGACCTCCTCTTCCAAGTTCCAACGCGGC
GGATCTACCCTCGACTGCCGCTGTGCCGCCCCAGCGTCACCACCGGCGCCTCCTCTCGCC
ACTCGGAGACGGGCGTCGTCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCACCG
CCACCGTTCCCCTTCTTCCCCGCCCCCCCGGGAGATCCTGGCCATCGGGTCTCCTTCCTT
CCTCTGAGGGCCAAAGTTTAGCTTGACGCCAACATGTCGTCGAAGAAGATAGAGCTAGAC
CACAAGGACATGGTTCATGATTCTGCCATTGACTACTATGGGAAGCGCCTTGCCACAGCT
TCCTCGGACTCCACTGTGAAGATCACCAACATTGGAGGTGCATCTGCCCCGTCCCAGCTC
GTTGCCACCCTCACTGGCCACTATGGTCCTGTATGGCGTGTTGGATGGGCCCATCCCAGT
ATGGTTCAATTCTGCATCCTGCGCTATGATGGCCGCGTGATAGTCTGGAAG

Homology of Contig U35_16259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None