- Probe CUST_28403_PI390587928
- Source Contig U35_42522
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28403_PI390587928 | Hv_44K_v2 | AATCTACTTTACCTTCTATTGGTTTGCCAGTCTTAGCACCAAAGGAGGATAGCAGGAGAG | 539 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.078 | 1.115 | 1.984 | 1.282 | 0.823 | 0.675 |
| Raw | 64.081 | 92.454 | 158.116 | 148.634 | 36.479 | 32.778 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44354.3 | 9670 | 2e-24 | 3491 - 3550 | 100 | 60 / 60 | plus | ABC18988 ABC49862 |
| MLOC | MLOC_44354.5 | 6342 | 2e-24 | 3490 - 3549 | 100 | 60 / 60 | plus | ABC49862 |
| MLOC | MLOC_44354.6 | 6931 | 2e-24 | 3486 - 3545 | 100 | 60 / 60 | plus | ABC18988 ABC49862 |
| MLOC | MLOC_44354.8 | 5337 | 2e-24 | 3399 - 3458 | 100 | 60 / 60 | plus | ABC49862 |
| MLOC | MLOC_44354.1 | 6050 | 2e-24 | 3492 - 3551 | 100 | 60 / 60 | plus | ABC49862 |
| MLOC | MLOC_44354.4 | 5050 | 2e-24 | 3490 - 3549 | 100 | 60 / 60 | plus | ABC49862 |
| MLOC | MLOC_44354.7 | 6400 | 2e-24 | 3486 - 3545 | 100 | 60 / 60 | plus | ABC18988 ABC49862 |
| MLOC | MLOC_44354.2 | 8428 | 2e-24 | 3492 - 3551 | 100 | 60 / 60 | plus | ABC18988 ABC49862 |
| JLOC1 | JLOC1_28745.2 | 7163 | 8e-25 | 3774 - 3833 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28745.1 | 6707 | 8e-25 | 3774 - 3833 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC38239 | 613 | 3e-25 | 540 - 599 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42522 | 613 | 3e-25 | 540 - 599 | 100 | 60 / 60 | plus |
Contig Sequence (613 bp)
>U35_42522 613 Hv_44K_v2 GGAGAAACATGGTGAGATGGTTCTCTTGGGTTTGCACTCTATTAGCTCAACAAATGTTGT AGATCAACATGATCATCAAATGGTGGATATTCCTGTGGGTAACCCAACTGAACCTGCTAT CCCAGCTGTAGAATCTATTGATGTGATGGATGCAGAGCTACTTTCTCCTCAGGTATCTGT TGAGCCGGATAATACCTATGACAGTAATAAAGGAATCAGTGGCGATGTTGAGAAACATGG TGAGGTAGTTCTCTCTGGTTTGCACTCTATTAGTTCAGTAAATGCTGTAGATCAACATGA TCATCAAATGGTGGATATTCCTGTGGGTGGTAACCCAATTGAACCTGCTATCCCAGCTGT GGAATCTACCGATGTGATGGATACAGAGCTTTCTCCTCAGGTATCTGTTGAGCCAGACAA TAATACTTATGAAAGTAACGCTGAAGGTCCTGTGGTTAACTCAAGCACAAAGAGAGATTT GTTGTCTTCTTGGATTGAATCCATTGTGTCAGAAGCTAAAAAGGATCATCAACCATGCAA ATCTACTTTACCTTCTATTGGTTTGCCAGTCTTAGCACCAAAGGAGGATAGCAGGAGAGC AGGATTGGACTCG
Homology of Contig U35_42522 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |