barSeed - Barley Seed Development Database

Probe CUST_283_PI390587928

Source Contig U35_32036

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_283_PI390587928	Hv_44K_v2	TACTACAATCTCAAGCTGAAACATCCGACTTTGGACATGCCAGTGATCGACTATGACCTG	372	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.178	0.502	1.633	1.654	1.085	0.926
Raw	24.248	94.902	302.972	452.368	107.976	103.292

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60959.3	1878	2e-24	721 - 780	100	60 / 60	plus	ABC17741
MLOC	MLOC_60959.4	1815	2e-24	498 - 557	100	60 / 60	plus	ABC17741
MLOC	MLOC_60959.5	1817	2e-24	483 - 542	100	60 / 60	plus	ABC17741
MLOC	MLOC_60959.1	2129	2e-24	795 - 854	100	60 / 60	plus	ABC17741
MLOC	MLOC_60959.2	2132	2e-24	798 - 857	100	60 / 60	plus	ABC17741
JLOC1	JLOC1_39787.2	2158	8e-25	736 - 795	100	60 / 60	plus
JLOC1	JLOC1_39787.1	2212	8e-25	790 - 849	100	60 / 60	plus
Harvest35	U35_32036	441	3e-25	373 - 432	100	60 / 60	plus

Contig Sequence (441 bp)

>U35_32036 441 Hv_44K_v2
TCGAGCACTGTTGGCCTCGCGTGCGCCGCCGTGTTCGCCGTCGCCGCCGCCGCCGACCGT
GGGCTCTCGCTGCGCGCCCACCGCGCCGTGGTGGCGGCGCCGGACGAGATCAGCCTCCTC
AACAAAATTGCCAATTTCATGTGGCAGACCGACGGGAACTCGTACCAGCACGTCTGGCCG
CCAATGGAATTTGGATGGAAAATGGTGCTGGGGTCTCTGATCGGATTCTTCGGCGCGTCA
TTTGGGAGCGTCGGAGGTGTTGGTGGCGGCGGGATCTTTGTGCCGATGTTGACGTTGATC
ATAGGTTTTGATCCCAAGTCTTCAACTGCCATATCCAAGTGTATGATCACTGGTGCAGCT
GTNTCANCTGTGTACTACAATCTCAAGCTGAAACATCCGACTTTGGACATGCCAGTGATC
GACTATGACCTGGCGCTGCTC

Homology of Contig U35_32036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g28350.1	470	4e-55
Arabidopsis v10	None