barSeed - Barley Seed Development Database

Probe CUST_28395_PI390587928

Source Contig U35_42528

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28395_PI390587928	Hv_44K_v2	CTAATACAGAATGACTTGATTCATGGATGGGGCCTTGACATGAAGCTTGGTTATTGCGCT	247	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367852	3301	7e-23	1137 - 1196	98	59 / 60	plus	None
MLOC	MLOC_66327.1	3233	7e-23	2472 - 2531	98	59 / 60	minus	None
MLOC	MLOC_66327.4	1801	7e-23	1040 - 1099	98	59 / 60	minus	None
MLOC	MLOC_66327.2	3247	7e-23	2490 - 2549	98	59 / 60	minus	None
MLOC	MLOC_66327.5	1114	7e-23	353 - 412	98	59 / 60	minus	None
MLOC	MLOC_66327.3	3013	7e-23	2252 - 2311	98	59 / 60	minus	None
JLOC1	JLOC1_43688.2	3218	4e-23	702 - 761	98	59 / 60	plus
JLOC1	JLOC1_43688.1	3288	4e-23	692 - 751	98	59 / 60	plus
Harvest21	ABC38248	337	3e-25	248 - 307	100	60 / 60	plus
Harvest35	U35_42528	337	3e-25	248 - 307	100	60 / 60	plus

Contig Sequence (337 bp)

>U35_42528 337 Hv_44K_v2
TATGGGGGACGAGGCACAAACTGACATCTGGATCCTGATCTATCAACAGATATTCACCAC
AGAATCACAATCCGCAACATGCTGACAAAAGTGCATAGGAGAGTATATGACAATCGTTCA
AGCATGAACTGTTCTGATGATAGTAGAGGACCTCCATGCACAGGTCTTGTAACTCGCATT
CTTTGATAGGTGGGTTGAGGTCATGGCTCCAGTTTTTTCTCGTGCTGCCTGGAAATGCGT
ATGGCATCTAATACAGAATGACTTGATTCATGGATGGGGCCTTGACATGAAGCTTGGTTA
TTGCGCTCAGGGTGATCGAGCTGAGAAGGTCGGTGTA

Homology of Contig U35_42528 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None