barSeed - Barley Seed Development Database

Probe CUST_28393_PI390587928

Source Contig U35_28238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28393_PI390587928	Hv_44K_v2	TTTCTGGAGGAAGAATTTTTGCAGAGTTCAGGAGATTTCCAATGTGTTGGTTCTCTTGGT	517	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.556	1.900	1.174	0.747	0.831	0.582
Raw	17.363	30.755	17.614	14.778	6.336	4.071

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51331.1	3492	2e-24	1714 - 1773	100	60 / 60	minus	None
MLOC	MLOC_51331.3	3071	2e-24	1609 - 1668	100	60 / 60	minus	None
MLOC	MLOC_51331.4	3041	2e-24	1364 - 1423	100	60 / 60	minus	None
MLOC	MLOC_51331.2	3853	2e-24	1690 - 1749	100	60 / 60	minus	None
JLOC1	JLOC1_32786.1	3792	8e-25	2006 - 2065	100	60 / 60	plus
Harvest21	ABC26992	580	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_28238	580	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_28238 580 Hv_44K_v2
GCACCAGCTGCGTGAATTTAAGGAGTGGATGGATGAAAATACAGAGAACGCAGATGGTGA
CAACCTTTACGTTGATTTCACTAACAGAAATGGAAGTCAGAACAAACAAAACAGAAGAGA
AAAAATGAACATAGAGAGCTCTGAGAGTGTCACGGACCTGGCAAAGAAATCAGAAGATGG
GAGCAGCTCAAACCTTTTGGAGTCTAAATTGTCTTCCACAGATGATGCATGCAATGGCAC
TAATGGCTTCACTGCAGTATCCTTGAACGAAGTGAATACTGACCAAACTCATGTAAGGGT
ACACTTGAATTCTGCCCTACAGCTTCCTCCGCTAGAATTTGTGGGCACTTCACATCCAGA
TTCTTTTGCCGATGTGGAAGGTGGTGCAATTTTTTTGCATACGAACGGAACACCCTCTAA
TGCAACAAGTAAGCTGACAGAACCAAGTCCATCCTTTGCATACCCTAGTCCACAGTCACC
CCCACAATACAAGGAAGACCTCCTACGCCGCAGACTTTTTCTGGAGGAAGAATTTTTGCA
GAGTTCAGGAGATTTCCAATGTGTTGGTTCTCTTGGTAGT

Homology of Contig U35_28238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12160.2	964	2e-51	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g69590.1	1116	4e-67
Arabidopsis v10	None