- Probe CUST_28392_PI390587928
- Source Contig U35_28239
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_28392_PI390587928 | Hv_44K_v2 | TCGGCTCCTTGCCATGGACTGCTGTTGTTTTCTTCACAATGTGGTTTGAGCTAATTGGTT | 631 | GeneList: darkturquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.488 | 0.709 | 1.578 | 2.226 | 1.320 | 0.997 |
Raw | 5.083 | 12.308 | 26.777 | 58.338 | 12.867 | 10.159 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK250076.1 | 1996 | 2e-24 | 958 - 1017 | 100 | 60 / 60 | plus | ABC16772 |
MLOC | MLOC_65434.1 | 2360 | 2e-24 | 922 - 981 | 100 | 60 / 60 | minus | ABC16772 |
MLOC | MLOC_65434.5 | 1371 | 2e-24 | 899 - 958 | 100 | 60 / 60 | minus | ABC16772 |
MLOC | MLOC_65434.6 | 1907 | 2e-24 | 899 - 958 | 100 | 60 / 60 | minus | ABC16772 |
MLOC | MLOC_65434.2 | 2103 | 2e-24 | 922 - 981 | 100 | 60 / 60 | minus | ABC16772 |
MLOC | MLOC_65434.3 | 1992 | 2e-24 | 900 - 959 | 100 | 60 / 60 | minus | ABC16772 |
MLOC | MLOC_65434.4 | 1999 | 2e-24 | 900 - 959 | 100 | 60 / 60 | minus | ABC16772 |
JLOC1 | JLOC1_43061.6 | 2219 | 8e-25 | 1028 - 1087 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_43061.5 | 2135 | 8e-25 | 944 - 1003 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_43061.4 | 2536 | 8e-25 | 1345 - 1404 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_43061.3 | 1564 | 8e-25 | 373 - 432 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_43061.2 | 1971 | 8e-25 | 780 - 839 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_43061.1 | 2401 | 8e-25 | 1210 - 1269 | 100 | 60 / 60 | plus | |
Harvest21 | ABC26996 | 694 | 3e-25 | 632 - 691 | 100 | 60 / 60 | plus | |
Harvest35 | U35_28239 | 694 | 3e-25 | 632 - 691 | 100 | 60 / 60 | plus |
Contig Sequence (694 bp)
>U35_28239 694 Hv_44K_v2 TGCAGNAATTCGCACGNAGGGNATCTACCACCAGTTGCGCGAGGCTCCGGCCTTCCGCTC CTCCAAGCTCTTCCAGCATGAGGTGTCCTTGCTCTTCAGTATGACCGCCCCACTATTCTT GCCATCGGAACTGTCTTCTGGGCTCTATCAACAGGGGCCGTTGGCGTCAGCCAGTATTTT CAGCAGGTTGCGTTCTGGAGAGGTGTAAATGGTGTTGGACTTGCCATTGTCATACCATCA CTTCAGTCCTTCATTGCTGATAGCTACAGAGATGGCACCCGTGGCGCCGGTTTTGGTTTG TTGAGCCTCATTGGCTCAATAGGTGGTATAGGAGGAAGTATTGTCGCAACTGTCATGGCT GGAAGGGATTATTGGGGATTTCCTGGATGGCGGTTTGCATTTATTGTGGTCGCGTTTGCA AGCTTGTTGATTGGGTTTCTTGTTTACTTCTACACCGTTGATCCTAGAAAAACATCTCCA GGCAATTTTGGTGACGACGACACTCATGAGAGGTCACGTTTGGTTGGCAACAGTGTTTTC CCTCCACTGTCCATCTGGAAGGATTCATGGATAACAGCAAGATCTGTCATGAAAGTGCGG ACATTTCAAATCATCGTCCTGCAAGGCATAGTCGGCTCCTTGCCATGGACTGCTGTTGTT TTCTTCACAATGTGGTTTGAGCTAATTGGTTTCG
Homology of Contig U35_28239 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os03g59450.1 | 471 | 7e-110 | protein|transporter-related, putative, expressed |
Brachypodium v1_2 | Bradi1g04500.1 | 470 | 2e-116 | |
Arabidopsis v10 | AT4G36790.1 | 489 | 1e-70 | Major facilitator superfamily protein | chr4:17336360-17338304 FORWARD LENGTH=489 |