barSeed - Barley Seed Development Database

Probe CUST_28382_PI390587928

Source Contig U35_16263

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28382_PI390587928	Hv_44K_v2	ATAAGAAGCCTAGCTTAGGGCGTGCTGTGATTCTTTCACTTGCGAATTATCTCTTTCAAA	699	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.930	1.949	0.982	0.923	0.427	0.524
Raw	1220.493	1886.766	851.293	1272.908	209.066	275.336

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370769	3992	3e-22	3890 - 3945	100	56 / 56	plus	ABC05056
MLOC	MLOC_64421.4	1994	3e-22	1334 - 1389	100	56 / 56	plus	ABC05056
MLOC	MLOC_64421.3	1565	3e-22	1460 - 1515	100	56 / 56	plus	ABC05056
JLOC1	JLOC1_42305.2	3237	1e-22	3133 - 3188	100	56 / 56	plus
JLOC1	JLOC1_42305.1	2167	1e-22	1472 - 1527	100	56 / 56	plus
Harvest21	ABC05056	776	5e-23	22 - 77	100	56 / 56	minus	ABC05056
Harvest35	U35_16263	775	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (775 bp)

>U35_16263 775 Hv_44K_v2
GCACTTATTTTGGGACGGAGGGAGTATGACCTTACAAATTTTTATCTGTTATAGGTTATA
GAACACAAGCCCTATGACCACAAAGCCGATGTTTTTAGTTTTGGAATTTTGTTGTGGGAA
CTGCTCACTGGGAAGATTCCTTATGAGTACCTGACACCATTACAAGCAGCTGTAGGTGTG
GTTCAGAAGGGGTTGCGGCCTACAATACCAAAAAATGCGCATGCAAAGCTCACGGAGCTT
CTTCAGAAGTGTTGGCAGCAGGACCCTGCTGAAAGGCCAGATTTCTCCGAAATATTAGAA
GCTCTTAAGAAAATAGCAGAGGAGGTTGGAGATGAGCACGACGGAAAGCACAAGGACAAA
AGCCTGGGTGGATTCTTTTCGTCTCTGAGGGGGCGAGGACACTAAGGTGGCACAGGTGTA
CATGATTTGCAATCCATTTGAACGGGCCGTGAACGAAGATCAGCGCCTGTTTGTCAGCAT
ACCCAGTGCCAGTACATTGAGATGGATGCCTGCTGCAGTGAACTTGTCCGGATGGCAACT
TTTCAGTTGTAGTTCCACTCATCGGCTACAGCCAATAGTTCTTTTTTGTCTGGTTATTTA
CTTCCGGGTTCTATTACATGTAACATAGGGAGAGAGTGCTCGTGGACTGTGTACATTATT
TAATCTGATTCCTCTAACTGGCTGTAACTTGCACATGAAATAAGAAGCCTAGCTTAGGGC
GTGCTGTGATTCTTTCACTTGCGAATTATCTCTTTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16263 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37230.1	604	2e-60	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi4g36880.1	593	6e-60
Arabidopsis v10	None