barSeed - Barley Seed Development Database

Probe CUST_28379_PI390587928

Source Contig U35_16264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28379_PI390587928	Hv_44K_v2	TGCACGTGTTAAAGTTCAGTCTGGAGTAATGACTGCAGAAACAGGGACATACCGTTGGAT	1494	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370769	3992	2e-24	1502 - 1561	100	60 / 60	plus	ABC05056
MLOC	MLOC_64421.4	1994	2e-24	619 - 678	100	60 / 60	plus	ABC05056
MLOC	MLOC_64421.1	2018	2e-24	837 - 896	100	60 / 60	plus	None
MLOC	MLOC_64421.3	1565	2e-24	745 - 804	100	60 / 60	plus	ABC05056
MLOC	MLOC_64421.2	1974	2e-24	748 - 807	100	60 / 60	plus	None
JLOC1	JLOC1_42305.2	3237	8e-25	748 - 807	100	60 / 60	plus
JLOC1	JLOC1_42305.1	2167	8e-25	757 - 816	100	60 / 60	plus
Harvest21	ABC05055	1993	3e-25	1253 - 1312	100	60 / 60	plus
Harvest35	U35_16264	1895	3e-25	1495 - 1554	100	60 / 60	plus

Contig Sequence (1895 bp)

>U35_16264 1895 Hv_44K_v2
CCCTCTCCCTCTTTCCATTTTCCTCCCCCCTTTTCTCCCTCTCTCTCCCGAGGGCGGCAT
CGATCGCGCACGATTTACCTCCCTCCTTCCGGAATCCGCGACCGAGATCGGGGCGGTAAT
GGCGGTGGAGGAGGTGGCCGAGAGCTGCGGCAGCCACGCGGCGGCGGCGGGCGGAGGCGG
CGGCGGAGGCGGGGCGGGGTCCTCGTCCCCGCCGGGCGCCGCGGGGTCGGGGTCGGTGGC
GGGGGCGCAGTCGAGGAAGCAGCAGCAGCAGCACCACCACAAGCTGGAGGTCTACACCGA
GGTGCTGGCACGCCTCCACGCCGCCGAGGAGCGCGCCCCCGGCTTCGACGACGAGCTCTG
GAGCCACTTCAACCGCCTCCCCGCACGCTACGCCATGGACGTGAACGTGGAGAGGGCGGA
GGACGTGCTCACGCACAAGCGCCTCCTCGAGCTGGCCAGGGATCCCGCGCAGCGCCCGGC
CTTCGCCGTGCGGGCCGTGCAGGTATCTCCAATTCTTGATGGGAATCAGACTGATGCTGA
TTCACACACTGCAGGGGAGGAAGTTGCTTCAAGGCTGTTGAATAGGCAACAAAGCATTCA
CCCTCCTCCTGCCTTTGGTTCATCTACAAACCTTGACGCCCTTGCTCTTGAAGCCAGCAA
GTCGCAAGGCCAAGATCAGGATAGCACATCGGATAATGTTCGATCTCTCTACAGACCCAT
GCATGAAATCACCTTCTCTACCATTGACAAACCAAAGCTTCTCAGCGAGCTGACATGTCT
GCTTGGTGAAATTGGTCTCAACATTCAAGAAGCACATGCGTTTTCGACAAATGATGGCTA
CTCACTCGACGTATTTGTTGTTGTTGGTTGGCATGCCGAGGAAACAGTGGATTTAATAGA
AGAATTAAAAAAAGAAATCATCAAGATTGAGGAGACACAAGCATGGTCTACATCTCATTC
ATGGTCTTCTCCAGTTGAAAATATGCAGATCGTGGAGAACTCAACAGCCGATCATGTTGC
TATACCTACAGATGGTGCTAGTGAATGGGAAATTGATATAAAACTACTCAATTTCGGCAA
TAAAGTAGCATCTGGATCATATGGTGATCTCTTCCGGGGTACATATTGTAGTCAAGATGT
AGCTATTAAAGTTCTCAAACCCGAGAGGGTAAATGTGGACATGCAGCGTGAATTTGCCCA
GGAAGTTTATATTATGAGGAAGGTTCGTCACAAGAATGTTGTGCAATTTATTGGTGCATG
CACTAAACCCCCCAGGCTATGCATAGTCACAGAATTTATGTCCGGTGGGAGTGTGTATGA
TTATCTCCATAAACATAAAGGTATCTTCAAGCTGCCGGCCTTAGTTGGAGTTGCAATGGA
TGTGTCAAAAGGCATGAGCTACTTGCACCAAAACAATATTATTCATCGGGATTTGAAAAC
CGCCAATCTTCTTATGGATGAAAACGGGATGGTTAAGGTTGCTGATTTTGGCGTTGCACG
TGTTAAAGTTCAGTCTGGAGTAATGACTGCAGAAACAGGGACATACCGTTGGATGGCCCC
AGAGGTTATAGAACACAAGCCCTATGACCACAAAGCCGATGTTTTTAGTTTTGGAATTTT
GTTGTGGGAACTGCTCACTGGGAAGATTCCTTATGAGTACCTGACACCATTACAAGCAGC
TGTAGGTGTGGTTCAGAAGGGGTTGCGGCCTACAATACCAAAAAATGCGCATGCAAAGCT
CACGGAGCTTCTTCAGAAGTGTTGGCAGCAGGACCCTGCTGAAAGGCCAGATTTCTCCGA
AATATTAGAAGCTCTTAAGAAAATAGCAGAGGAGGTTGGAGATGAGCACGACGGANAGCA
CAAGGACAAAAGCCTGGGTGGATTCTTTTCGTCTC

Homology of Contig U35_16264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g37230.1	604	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi4g36880.1	593
Arabidopsis v10	AT4G38470.1	575	ACT-like protein tyrosine kinase family protein \| chr4:17999432-18003551 FORWARD LENGTH=575