barSeed - Barley Seed Development Database

Probe CUST_28375_PI390587928

Source Contig U35_16266

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28375_PI390587928	Hv_44K_v2	ATTTCTCTAGCGGCAGCTAGTCGACGCACGTGAAGCCTGAGCTTAGCTTGAGCCGTAGAG	202	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373368	1341	2e-24	161 - 220	100	60 / 60	plus	ABC06358 ABC12706
MLOC	MLOC_64887.1	1827	2e-24	1367 - 1426	100	60 / 60	minus	ABC06358 ABC12706
MLOC	MLOC_64887.2	1196	2e-24	736 - 795	100	60 / 60	minus	ABC12706
MLOC	MLOC_64887.3	1547	2e-24	1087 - 1146	100	60 / 60	minus	ABC06358 ABC12706
JLOC1	JLOC1_42646.1	1573	8e-25	251 - 310	100	60 / 60	plus
Harvest21	ABC06359	450	3e-25	173 - 232	100	60 / 60	plus
Harvest35	U35_16266	513	3e-25	203 - 262	100	60 / 60	plus

Contig Sequence (513 bp)

>U35_16266 513 Hv_44K_v2
AATAGATGCCAAATCAAATTCCCGGCCGCGGCGAGCGCTCCCTGCCAGAGCGCGAGCGAG
CAAGAGACACTAGTCATCAGGGACCAGCCGTCGCCTAACCGCAGAGGCCCTCTCGTCCAC
AGGAAGCTCCCGCGTGTGCACGTCGCCGCGATTTATACGCCGCTCGTTTCTCGCCGTCGC
CCCTCCACTCCCGTCTCCCATCATTTCTCTAGCGGCAGCTAGTCGACGCACGTGAAGCCT
GAGCTTAGCTTGAGCCGTAGAGCGAGCGACCGGAGCCGACAAGCAAGAAAGCGCGGGAAG
GCAGCTGCCATGAGGATCCAGTGCGACGCGTGCGAGGGCGCGGCGGCGACGGTGGTGTGC
TGCGCGGACGAGGCGGCGCTGTGCGCGCGCTGCGACGTGCAGATCCACGCCGCCAACAAG
CTGGCCAGCAAGCACCAGCGCCTCCCGCTCGAGGGCGCCGCGGCGGCGGCAGGGCTCCNG
CGCTGCGACGTGTGCCAGGGACAGCCGGCCTCG

Homology of Contig U35_16266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None