barSeed - Barley Seed Development Database

Probe CUST_28370_PI390587928

Source Contig U35_16269

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28370_PI390587928	Hv_44K_v2	GTGAATCAAGCCAGCCATGGAAAATGTGTGCAAGAGAAAATTAAACTATTGGTATTTGTA	2018	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38517.2	2381	2e-24	2246 - 2305	100	60 / 60	plus	ABC06707
JLOC1	JLOC1_25052.1	2304	8e-25	2106 - 2165	100	60 / 60	plus
Harvest21	ABC06707	2099	3e-25	2019 - 2078	100	60 / 60	plus	ABC06707
Harvest35	U35_16269	2100	3e-25	2019 - 2078	100	60 / 60	plus

Contig Sequence (2100 bp)

>U35_16269 2100 Hv_44K_v2
GCTAAACTATACCGATCGTCTGTATAATCCTCAAGCAGCTAGCACAGAGGCGTCGTCGCC
GATGGACCGCGCCGCGCTCCCGGCGGCCGTCGAGCCCAAGAAGAAGGGCAACGTTAGGTT
CGCCTTCGCCTGCGCCATCCTCGCCTCCATGACCTCCATCCTCCTCGGCTACGACATCGG
TGTGATGAGCGGAGCGTCGCTGTACATCCAGAAGGACCTGAAGATCAACGACACCCAGCT
GGAGGTCCTCATGGGCATCCTCAACGTGTACTCGCTCGTTGGCTCCTTCGCGGCGGGGCG
GACGTCTGACTGGATCGGCCGGCGCTTCACCATCGTCTTCGCCGCCGTCATCTTCTTCGC
GGGCGCCCTCATCATGGGCCTCTCCGTCAATTACGCCATGCTCATGTTCGGCCGCTTCGT
GGCCGGCATCGGCGTGGGCTACGCTCTCATGATCGCACCCGTGTACACGGCCGAGGTGTC
CCCCGCGTCTGCCCGTGGCTTCCTCACCTCCTTCCCGGAGGTGTTCATCAACTTCGGCAT
CCTTCTCGGATATGTTTCCAACTTCGCCTTCGCCCGCCTCTCACTCCGCCTCGGCTGGCG
CATCATGCTCGGCATCGGCGCGGTGCCGTCCGTCCTACTCGCCTTCATGGTGCTCGGCAT
GCCCGAGTCACCCCGGTGGCTCGTCATGAAGGGCCGTCTCGCGGACGCCAAGGTTGTTCT
TGCCAAGACTTCTGACACGCCGGAGGAGGCCGCTGAGCGCCTTGCCGACATCAAGACTGC
AGCCGGTATCCCTCTGGACCTCGACGGCGATGTGGTCACCGTGCCCAAGAACAAAGGAAG
CAGCGAGGAGAAGCGCGTGTGGAAGGATCTCATCCTGTCCCCGACCTCAGCCATGCGGCA
CATCCTCATCGCGGGAATCGGCATCCACTTTTTCCAGCAATCTTCTGGCATCGATGCCGT
TGTGCTCTACAGCCCGCGAGTTTTCAAGAGCGCCGGCATCACGGGCGACAACCGCCTCCT
CGGCACCACCGTGGCCGTCGGGGCCACTAAGACGGTCTTCATCCTGGTTGCCACCTTCCT
CCTGGACCGCATCGGCCGGCGGCCGCTGCTGCTGACCAGCACGGGTGGCATGATCGTCTC
CCTCGTCGGCCTCGCGACGGGGCTCACCGTCGTCAGCCGTCACCCAGACGAGAAGATCAC
CTGGGCCATCGTCCTGTGCATCTTCTGCATCATGGCCTACGTGGCCTTCTTCTCCATCGG
CCTCGGCCCCATCACGTGGGTGTACAGCTCGGAGATCTTCCCGCTGCACGTGCGCGCGCT
GGGCTGCTCCCTCGGCGTGGCCGTCAACCGCCTGACCAGCGGCGTGATCTCCATGACCTT
CATTTCGCTGTCCAAGGCCATGACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGCATCGC
CTCGTTCGCGTGGGTTTTCTTCTTCGCCTACCTGCCGGAGACCCGCGGCCGCACGCTGGA
GGACATGAGCTCGCTGTTCGGCTCCACGGCCACGCGCAAGCAGGGCGCCACGGAAGCCGA
CGACGACGCCGGGAAGGACAAGAAGGTGGAAATGGCCGCCACCAACTGACCGCAAGTTGG
CAGATCGCGATGCGAAGACTTGCGCTGTATCCGTCTCGGCTAGCTAGCTGCCACACTGCC
AGAGGAAGTAACGTGGGAAGATTCGCTGATCCGGCCGGTGCTGCCGGAGGGCGACGGCGA
GCTCCAACTCGATCGAGACGTTAATGGCTTCTTAATGTGCTAAGTTTAATATTTCGCGCT
TTGGCTCGTTTTGTCCGGGTAGGTCGTGAGCAATCCGGCAGTGCCAATGCCAAGGCTAAT
CGCTGCCGGACTATACTACTGTAGTAGACTGTAGAGGTGTACCGTAGCTACTTCCGTGGC
GTTTGTCTCGTACTCGCGCTGCATGGCTCAAGTGCACGCGAGCTTTGGTTATTAGAGAGA
AAAAATGGGGGTGGTTCAAGGAATCTACCTGCCATCGAGTGAATCAAGCCAGCCATGGAA
AATGTGTGCAAGAGAAAATTAAACTATTGGTATTTGTATTGTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g39350.1	578	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi1g23450.1	514
Arabidopsis v10	AT3G18830.1	539	\| Symbols: ATPLT5, PMT5, ATPMT5 \| polyol/monosaccharide transporter 5 \| chr3:6489000-6491209 REVERSE LENGTH=539