barSeed - Barley Seed Development Database

Probe CUST_28364_PI390587928

Source Contig U35_28244

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28364_PI390587928	Hv_44K_v2	AGCGCTATGAGGAAAAACAATTATGATGGCTACTGGTTTTGGACATAGGCATAAATTTAC	315	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69179.2	2999	7e-23	548 - 607	98	59 / 60	plus	ABC39357
JLOC1	JLOC1_45830.8	2928	4e-23	530 - 589	98	59 / 60	plus
Harvest21	ABC27000	568	3e-25	316 - 375	100	60 / 60	plus
Harvest21	ABC35794	648	1e-23	314 - 373	98	59 / 60	plus
Harvest35	U35_28244	568	3e-25	316 - 375	100	60 / 60	plus
Harvest35	U35_12570	1004	1e-23	314 - 373	98	59 / 60	plus

Contig Sequence (568 bp)

>U35_28244 568 Hv_44K_v2
TTCGGACGAGGTCGGCTTCGCTCTCTTCGAGGCCGCCCTGCAGCTGCTCCTCCCCGGGAA
GCGCTTCGAGGGGCCCATCTCGCCCTCCGGCAATGTGCCTGTCTACAAGGCAAATGGTTT
ACTAGCATATGCAGTGACTTTGCTCACCTACCTAAGCCTCTGGTGGTAAGGCTACCTAAT
TTTCTCGCGCGGACTGGACTCACCTACTGATTGCCTTCGAACTGCATCGCTTGTCATTTT
GGTGGTTTCTTCCTTGAACAATTGAATGACTTGTCTACTTGTGTGCACTTGCATTGGCCA
TTTGATGTTTCTGGCAGCGCTATGAGGAAAAACAATTATGATGGCTACTGGTTTTGGACA
TAGGCATAAATTTACCTACATTTCCTTGTCTGTTGCTTGTCCAAAAATAGTTAACCCAAA
ATTGTTAGACTCGGTTCCATGCGGCTTTCATGCTGTCCATATCCGTTAAATGTACCAAAA
TAGGAGTTATCACTAACCTCGCATGCCCAGCCACTCAGGCTCTCTAAACTTAGGCCAGTA
TGTTGCCCCAGGGTCTTTTTTTTTTTTC

Homology of Contig U35_28244 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None