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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_28363_PI390587928Hv_44K_v2CATGTGTGTATAGCTTTGTTTCACATCAAATCTGAGCGCATGATGCTACTTGAGACTAAA563GeneList: thistle1
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.9952.3411.2890.6750.2620.539
Raw 712.574626.818315.969266.56236.02878.841



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC382586363e-25564 - 62310060 / 60plusABC38258
Harvest35U35_425376363e-25564 - 62310060 / 60plus



Contig Sequence (636 bp)

>U35_42537 636 Hv_44K_v2
GCCTAGCCGCAATCTACCTCTACTTATATCTCAAGCACATCCATATACTTTTGTGCGTCC
ATCGATGTATTTTCTTGGTATCATATCATATGAGGGGGATTGCTTGTGATGATTCAGGTC
CGAGAGGATCTTAGCGGATTTCGTTCTCATGGCCAAGACGGATAAGTACGTCATTGTTGA
CTACGCCATGAGGATCAAGATTAGCGCAACGGGCTACATCTAAGCCGGCTGGCGACAATC
GAGGCGGGAGAACAATAAGCACAAGGCGGTTCAACTTGACCCATGACCTGGAAGCAAGCA
GGTGGCCAACGTGGAGGAAGAGCAGCCGACTGCTCAAGTCGGTGCTCAGCGACAGCGGAC
CGGCAAAAACTCCTGGCAACCCAAGGTCATCTTCGAGCAGATGCTCGATGCCGCTTCGCA
CAACGCCTGTCCTGGGGTGAGGGTCTGCTGGCTCCCCTTGGGGCTGCGCCTCGAGGTCAT
TGTGGGGTGTATGACAGTTCTCACTTTAAGTCTGGATATATGACCCTAAACTATGTAGAG
CAAACTCAATATATTCTAGTTGTCATGTGTGTATAGCTTTGTTTCACATCAAATCTGAGC
GCATGATGCTACTTGAGACTAAAAAAAAAAAAAAAA



Homology of Contig U35_42537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None