barSeed - Barley Seed Development Database

Probe CUST_28357_PI390587928

Source Contig U35_28249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28357_PI390587928	Hv_44K_v2	ACACTACACAAGATGCTAACTCAATTTTCAGGAAATGTGCACACATCTTGGCCCTACATC	624	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368479	2177	2e-24	932 - 991	100	60 / 60	plus	ABC09647
MLOC	MLOC_20680.5	1708	2e-24	738 - 797	100	60 / 60	minus	None
MLOC	MLOC_20680.6	1696	2e-24	738 - 797	100	60 / 60	minus	None
MLOC	MLOC_20680.1	1868	2e-24	750 - 809	100	60 / 60	minus	None
MLOC	MLOC_20680.2	1788	2e-24	750 - 809	100	60 / 60	minus	None
MLOC	MLOC_20680.8	1998	2e-24	677 - 736	100	60 / 60	minus	None
MLOC	MLOC_20680.4	1663	2e-24	616 - 675	100	60 / 60	minus	None
MLOC	MLOC_20680.7	1826	2e-24	737 - 796	100	60 / 60	minus	None
MLOC	MLOC_20680.9	1757	2e-24	357 - 416	100	60 / 60	minus	None
MLOC	MLOC_20680.10	1330	2e-24	357 - 416	100	60 / 60	minus	None
MLOC	MLOC_20680.3	1842	2e-24	750 - 809	100	60 / 60	minus	None
JLOC1	JLOC1_14339.5	1227	8e-25	991 - 1050	100	60 / 60	plus
JLOC1	JLOC1_14339.4	2062	8e-25	1338 - 1397	100	60 / 60	plus
JLOC1	JLOC1_14339.3	1715	8e-25	991 - 1050	100	60 / 60	plus
JLOC1	JLOC1_14339.2	1268	8e-25	677 - 736	100	60 / 60	plus
Harvest21	ABC27009	751	3e-25	625 - 684	100	60 / 60	plus
Harvest21	ABC11030	725	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_28249	751	3e-25	625 - 684	100	60 / 60	plus
Harvest35	U35_19427	725	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (751 bp)

>U35_28249 751 Hv_44K_v2
CTGAGGCATNCGGTTCGAGGCAGGNTCCTGGACCTGGCGCGGCTTGGGGCCGTGGCGGAG
GGCGCGGCGGAGGCCTTCTTCCGCAGCGAAATACGGCGGCGGCTTGCCGTCACGGCCGTG
CTCATCGTGCTCAGCCGCGTCGGCTACTTCGTGCCGCTTCCTGGGTTCGACCGCCGCCTC
ATCCCCGACTCCTATCTCAGCTTCGCCCCGCTCCCTGCAGATGACCTCGTTGATTTTGCT
TCTGAACTGAAGCTATCATTTTTCCAGCTGGGAATCAGTCATCAGATATCAGCATCGATT
GTGATGCAGGTTCTTTGCCATGTTCTTCCATCACTTGAAAAGATTCGCAAGGAAGGATTA
GACGGGCATGAGAAGATCAAAAGCTATATATGGTGGCTATCACTGGGTTTTGCAATTGTG
GCTGCTTGTACTGTGTCATGCTATTCGCTGCAGTACTCCATATATGCAGCAAGTTACAGG
GTTAAGCATGTCATATTAACAAGCTTTCTGCTTGTCCTCGGTGCAATGTCAACGACTTGG
ATCTGTGACACCATAACGGAATCTGGCTTTGGGCATGGCTCATCTTTGATTATCTGTGTT
GGAATATTGACTGGTTACACAAATACACTACACAAGATGCTAACTCAATTTTCAGGAAAT
GTGCACACATCTTGGCCCTACATCTGGNGAGTAGCTGGGATCTTTATGATGGTTACCATG
GGGGCAGTGTTGGTGACTGAAGGATGTAGGA

Homology of Contig U35_28249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33020.1	543	2e-137	protein\|preprotein translocase subunit secY, putative, expressed
Brachypodium v1_2	Bradi2g26310.1	532	2e-147
Arabidopsis v10	AT2G31530.1	575	5e-105	\| Symbols: EMB2289, SCY2 \| SecY protein transport family protein \| chr2:13427060-13430308 FORWARD LENGTH=575