barSeed - Barley Seed Development Database

Probe CUST_28354_PI390587928

Source Contig U35_30562

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28354_PI390587928	Hv_44K_v2	GAAGTATGTAATTATGATGTACTGCTAGCAGCTTGCTGGTTAATTTTCCTTGGCATTTTG	355	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60488.1	7869	7e-23	5323 - 5382	98	59 / 60	minus	ABC18459 ABC26738 ABC30536 ABC34594 ABC37694
MLOC	MLOC_60488.5	3806	7e-23	8 - 67	98	59 / 60	minus	ABC03926 ABC03927 ABC18459 ABC26738 ABC30536 ABC34594 ABC39256
MLOC	MLOC_60488.6	2028	7e-23	8 - 67	98	59 / 60	minus	ABC03926 ABC03927 ABC30536 ABC34594 ABC39256
MLOC	MLOC_60488.7	5010	7e-23	8 - 67	98	59 / 60	minus	ABC03926 ABC03927 ABC18459 ABC26738 ABC30536 ABC34594 ABC39256
MLOC	MLOC_60487.2	3175	7e-23	8 - 67	98	59 / 60	minus	ABC18459 ABC26738 ABC30536 ABC34594
MLOC	MLOC_60488.2	9067	7e-23	5317 - 5376	98	59 / 60	minus	ABC18459 ABC26738 ABC30536 ABC34594 ABC37694
MLOC	MLOC_60487.1	2299	7e-23	14 - 73	98	59 / 60	minus	ABC18459 ABC26738 ABC30536 ABC34594
JLOC1	JLOC1_39449.3	1904	4e-23	1532 - 1591	98	59 / 60	plus
JLOC1	JLOC1_39449.2	2682	4e-23	2310 - 2369	98	59 / 60	plus
JLOC1	JLOC1_39449.1	3777	4e-23	3405 - 3464	98	59 / 60	plus
Harvest21	ABC34594	579	3e-25	226 - 285	100	60 / 60	minus	ABC34594
Harvest21	ABC30536	432	3e-25	356 - 415	100	60 / 60	plus	ABC30536
Harvest35	U35_30562	432	3e-25	356 - 415	100	60 / 60	plus
Harvest35	U35_11078	709	1e-23	425 - 484	98	59 / 60	plus

Contig Sequence (432 bp)

>U35_30562 432 Hv_44K_v2
GAGGACCAACCACTTGCATGGCACTTAGTGAAAGCGGTTTTTACAAAGGCAAGATTTGAA
GATTATCCATCTGAAAGAGCATGTCAGACAAGACCACCATCAGAAGCAGCAATGCCACAG
AATATTGTGATGTATGTTTCTCATCAATGGAGGCTCCTGGAAGTCGGAGAACACTGCATT
TGTCTTGGTGTTTTGATTTGTCTTCTGCAAGCACATGAAGCTGTCCTTGTGATTGCATCC
TCTTGTGCCTGAATTCTATCATCTCTTCTATCGACTCAAGAACCATAAAGTTTCAGCGGC
CTCCTGTGTTTAGCTTGTTATATGAACTTATTTTTCCATTTCTTTGTGCTGTAAGGAAGT
ATGTAATTATGATGTACTGCTAGCAGCTTGCTGGTTAATTTTCCTTGGCATTTTGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_30562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None