barSeed - Barley Seed Development Database

Probe CUST_28348_PI390587928

Source Contig U35_16272

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28348_PI390587928	Hv_44K_v2	TACAATTGAATTGCTGCGAAGCTCTGTTACTTTGCAGCCTGTGGTCATAATTGCGCACAG	1697	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366586	1947	2e-24	1672 - 1731	100	60 / 60	plus	ABC05366 ABC05367
MLOC	MLOC_4547.1	998	2e-24	145 - 204	100	60 / 60	minus	ABC05367
JLOC1	JLOC1_2844.1	1184	8e-25	789 - 848	100	60 / 60	plus
Harvest21	ABC05367	1890	3e-25	1616 - 1675	100	60 / 60	plus	ABC05367
Harvest35	U35_16272	1978	3e-25	1698 - 1757	100	60 / 60	plus

Contig Sequence (1978 bp)

>U35_16272 1978 Hv_44K_v2
CGACCAGACCAACCAGGAGCCAAAACCAAACACCACCACCACCACCTCCCCCATCTCCTC
CCTCCCCCAAATCCGCCACCGCCGGCCCCGACCCCGACCCCCGGGCCGCCGCAGCGGGAA
TCCGGCGCCGCCACGCCCCGATCCGCCCGATCCGCGCCGGATCCCCTCCCTCCCCCAACC
GCGGGCGCCGAGCCCTACCCCACCCCACCCGCGGCAGATGGGCGTCGGCCGCACGAGCCG
CGGCGGGCCCTCCTCCTCCGCGGCCGCCGCGGGCAGGCCCTACTTCCCGCCGATCTCCGC
GCCGCCGGCCGCGCCCTCCCCCTCCCCGTCCCCGCCCGTCGAGACGGCCTCCACCTCCGT
CACCAAGACCGTCAACGGCTCGCACCACTTCAAGATCGCCGGCTACTCGCTCGCCAAGGG
GATCGGGGTCGGCAAGTACATCGCCTCCGAGTCCTTCACCGTCGGCGGCTTCGAGTGGGC
CATCTACTTCTACCCCGACGGCAAGAGCGCCGAGGACGGCGCCGCATACGTCTCGCTCTT
CATCGCGCTCGCCAGCGAGGGCACCGACGTGCGCGCGCTCTTCGAGCTCACCCTCGTCGA
CCAGAGCGGCAAGGGACAGGACAAGGTGCACACCCACTTTGGCCGCTCGCTCGAGGGCGG
GCCCTACACCCTCAAGTACCGGGGCAGCATGTGGGGTTACAAACGTTTCTTCAAACGCTC
TGGCCTGGAAACATCAGATTATCTTAAAGATGATTGCCTTCTGGTAAACTGCACCGTTGG
TGTTGTTCAGTCGCATACTGAAGGCCCAAAGATATACAGGATACCAGTGCCACAATCTGA
CATGTCTCAGCATATTGGGCATTTGTTGACCAGTGGGAAGAGAACCGACATAATATTTGA
AGTTGATGAAGAGATGTTTCCTGCTCACAAGGTGATTCTTGCAGCCCGATCACCAGTTTT
TAGGGCACAACTCTTTGGTCCCATGAAGGATAAAAACATGAAGTGCATAAAGATTGAAGA
CATGGAGGCTCCAGTATTCAAGGCCTTGCTCCATTTTATGTACTGGGATGAATTGCCCAA
TATAGAAGAGCTTACTGGTCTAAATACGACTTGGGTTTCCACTTTGATGGCTCAGCATTT
GCTTGCAGCTGCTGACCGGTATGCATTGGAGAGACTAAAGCTGCTTTCTGAACTCAAGCT
ATGTGAAGACGTTGCGATAAACACAGTTGCAAATACTTTGGCGCTGGCTGAACAGCACCA
TTGCCACCAGCTAAAAACTGTTTGCTTGAAATTTGTGGCCTCGCCGGAGAATTTGAAAGC
TGTCATGCAAACCGAAGGATTCGATTATTTGCAGCAAAGCTGCCCTTCACTCCTGACCGA
GCTTCTGGAGTATGTTGCGAAGGTAGGAGACCACGCTGTGCCCCCCTGCTTATATTCAAA
CGAAGTCCTGGATGGTGGCGATGCAAATGGAAGACGTGTGAAACCAAGGCTTTAACTGGT
CCCTGGGTCAAGCCTAGAAGGAGTTTCATGCCGTTTCGCTGTAAAGTGTCCGTATAACGG
CATGCATGCGGCATGCTGTAATGTGTATCGGTGTTTGTCTTGTGATTCTGATCTTCATCC
TCATCCTTAGCCGTGATGCTAGGCCGTGGTGCTAGTCTGGAGCGCGTTGGTGCTGATATA
TATTCAACTGACTGGCTTACAATTGAATTGCTGCGAAGCTCTGTTACTTTGCAGCCTGTG
GTCATAATTGCGCACAGGTGGCGCGGCGAAGGTCGACTGACCGGTACAAGGCTTGATCAA
GCAGAAATAAAAGCGCAGGATGTGTTCACAGTTGGTTTGTGCTAGGTCAGCCTTGTTGAT
TCCTAGTCGTCTGCATGATGTGTATTGTATTGAATTGAAATGATGTAATCAATGATATCT
ATTTGAATTGAATGTGTATGTTAAACCTTCTTATGATGGCAAAAAAAAAAAAAAAAGG

Homology of Contig U35_16272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g46160.1	435	protein\|MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
Brachypodium v1_2	Bradi1g19390.1	444
Arabidopsis v10	AT3G06190.1	406	\| Symbols: ATBPM2, BPM2 \| BTB-POZ and MATH domain 2 \| chr3:1874577-1876575 REVERSE LENGTH=406