barSeed - Barley Seed Development Database

Probe CUST_28331_PI390587928

Source Contig U35_16680

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28331_PI390587928	Hv_44K_v2	TGGGGATGTTGTGACCATGATTCTGCATATGGTTGTTGAACTGGATGTGCCATAGAAAAC	2231	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.652	1.859	1.369	0.664	0.202	0.231
Raw	364.956	664.936	422.398	325.374	35.866	43.247

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_16680	2291	3e-25	2232 - 2291	100	60 / 60	plus

Contig Sequence (2291 bp)

>U35_16680 2291 Hv_44K_v2
CCCGTCCTCTGCCGGCTACAGTCGCCTCCCATCCCCCCGACCCCGTCCTCTGCCGGCTAC
AGTCGCCTCCCATCCCCCCGACCCCGTCCTCTGCCGGCTACAGTCGCCTCCCGCCACGTC
CCCTACTCCAGCAGATCGACGCCGCCGCCCAGCTCGACCTCGTCCCCCGTCCCGCGGCCG
TATCCTTCCTTGGATCGACATGCAGGGCGACGATGGAACAAACAAGGCGTGGACAGGGGA
GAAGAGGCGCCGCAAGCACCTGCCCCCATCTCCTGCAACTGCCCACGACCACGCGGCAGA
CATGGAGGATGCCATCCAAGGGCACCAAGGTTCGATTTCTCATGCGACAGACATGGAGCT
GCTGCTCAGAACAGATTCGGCAGAAGGAGAAAGATACGGGCCGGACGTCCTTATCAGCGA
GGAAGGCCATGGAGATATGGAGGGCACCATCCAAGGGGGGCAAGATCAGATTTCTCATGC
GACAGACATGGAGGACACCTTCCAAGCGGGCCAAGATTATGATCTTCTGCTGAACACAGA
GCCGGCACAAGAAGAAAGCGAGCAGCGTTTCGGGCCGCACTTCCTTATCAGCGAGGAAGA
CCGTGCCAAGTATTCTCAACTTTTGCTTGCCAATATTCAGACGGAGGACGATTATCCTAC
TGACCTGCCACTTCATATGACATGGGAGGAACGGCACAAGATAGAAGCGCGCTTTGCACG
CTATCGCATCGCTCATTACAAGGTTGTAAATCCAGAGCGCGCACGTGAACTCAAGGAACC
AGAAGAATACACTGATGAGGAACTTCTCCGCGAGTCATACTTTGAGGCATTAGAGAATGA
TGAAAATTTTGAGTGGTACACCCATCGTGATGACATCCAGAACATTGAATTGAATGACTA
CCAACGGATTGTTCCTCGCAATTTTCTGCCTGATACGAGTGAAATCCTGTACGGCTATCA
CGATGAGTACCGCTCGCGTTATCATACATATAAAATTGATGATGCTTATGTCAAGTACTA
TGCAGAAATTTCAAAGAAAATCAAGTGGATTGCAGATTATTTGCATCTGGATCACAGGAC
TAAGGATTGGATAAAATGGGATACTAGAGCATGGAGGCAAGCATTGAGGATTGCAACCGG
CATTCCTCATATGACTGCAGATTTAGCTGGTTATGCTTATGATGAGTACATTATGGAGCT
GAAAATGAATGCGTCCCTCAAGGACATAGATCTCCTCTATTTTGAGATCTGGAGGCTTGT
CTATAAAGGATATAGAACTTACAAAGATGCTGTGAGGGAAGTATATGAGTCTGACAATTT
CCATGTGCACAAACCAAAACTACGTGCTGAACTCAATGGGGGCGCATGCCTCTTTGTAAC
AATGCAACAAACGATTTACTCTATTGCCCTGGAGGGTGGCATTAAGCGGACTGATGAAGA
GGAAAAGGCTCGGGCTGTGTTTAATGAGTTATCTTTCACTAGGCATAAATCAATGAACAT
GGCTGACTATGCTAAGAAGAAGGTGGAGATAGCAGATCAGTTGAAGTTGGACAAAAAGGG
TGGATTTGTTCCCTTTAGACCCTACGATTGAGCAAGGAAAAAGCTAGATTTGTCCCTTTT
GGCCTGAAATGAGCCGTTGTTTTCTCATATAACAGCAAGACAGAAGTATTACGAAGATTG
TATTACATACATAACTAGCCCAGCTCAGCAGTCTGACACTGTGGATGATGATTGGCTCAT
GTTTTTAAATTAGTGGACATCCCCTGTTGTAATGTTATTCACTAGTACGTATGCGTGATG
CTTGGTTTGTTTTCTGTACTTGCCATCAATAATAGTAAGATAGTGGTGACATAATGAGCA
GGTCTTTTTTGGACCTGTCTGAGTAGCAATATACTAGTATTATGCAATGGATGTATGTTG
GAGTGAAAGGATCAATCACTTGATTCATGTTGAAAAGTCACTTGCTGTCCCAAACAGCGA
GCCAGCAAGGCAAGTACCAAAATAGTACTTCCTTCGTCCAGCGGCCGCTGGGGAAGTTTA
CATCGAGATAGTTTGATGGTTGATGGAGTTGTAACCCCTCAGTTTATTGGTTGCTGGAGT
TGTTACCCCTCCTTTATTTAGGGGTGGTCAAAGTCCAGCTTATACCCCCGCCGCTTTGCG
CATCTCAGACTGGCTAACCAGTACAGCGCGGCAATTTTGTTTCATTTGTTCTTGGAGGGG
ATATGTGTAGATGGGGATGTTGTGACCATGATTCTGCATATGGTTGTTGAACTGGATGTG
CCATAGAAAAC

Homology of Contig U35_16680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73080.1	413	1e-57	protein\|expressed protein
Brachypodium v1_2	Bradi1g13380.1	409	4e-96
Arabidopsis v10	None