- Probe CUST_28330_PI390587928
- Source Contig U35_16681
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28330_PI390587928 | Hv_44K_v2 | GGCTATGAATCCAGACAGCGATGGACGTGTTAAAGCACAAGATTTTTGGGCTCTTTTTGG | 593 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.497 | 2.719 | 1.989 | 1.103 | 0.526 | 0.237 |
| Raw | 46.237 | 143.244 | 85.818 | 75.383 | 11.293 | 5.572 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356522 | 2050 | 2e-24 | 1374 - 1433 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.3 | 1830 | 2e-24 | 1490 - 1549 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.1 | 1995 | 2e-24 | 1577 - 1636 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.5 | 1815 | 2e-24 | 1475 - 1534 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.7 | 1558 | 2e-24 | 655 - 714 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.8 | 1751 | 2e-24 | 993 - 1052 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.4 | 2035 | 2e-24 | 1132 - 1191 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.2 | 1915 | 2e-24 | 1157 - 1216 | 100 | 60 / 60 | plus | ABC15782 |
| JLOC1 | JLOC1_23913.4 | 1965 | 8e-25 | 1152 - 1211 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23913.3 | 2297 | 8e-25 | 1484 - 1543 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23913.2 | 1955 | 8e-25 | 1142 - 1201 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23913.1 | 2313 | 8e-25 | 1500 - 1559 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15881 | 714 | 3e-25 | 594 - 653 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15781 | 830 | 1e-23 | 697 - 756 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_16681 | 714 | 3e-25 | 594 - 653 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16678 | 1455 | 1e-23 | 697 - 756 | 98 | 59 / 60 | plus |
Contig Sequence (714 bp)
>U35_16681 714 Hv_44K_v2 CATTTGTTGGGCCAATCATAAGAGCAATGCAGGTTATATACGTTGATAGATTCTCGCCAG CTTCAAGGAAGTCAGCTGTGAATGAAATAAAGGATGTGCTTTCAGAGAAAGGCAGCTGGC AATAGCTTTCCGCGTGTCCTGTTGTTCCCCGAAGGCACAACAACAAATGGGAGATTCCTG ATTTCATTCCAACATGGAGCATTCATACCTGGCTACCCCGTTCAACCAGTTGTTGTTCGT TACCCCCATGTGCACTTTGACCAATCCTGGGGAAACATATCACTAGTAGCACTCATGTTC AAGATGTTCACCCAGTTTCATAACTTCATGGAGGTAGAGTACCTCCCTATTGTCTACCCC CCTGAGATCAAGCAAGAGAATGCCCTTCATTTTGCAGAGAATACCAGCTTTGCTATGGCA CACGCCCTTAATGTTTTACCGACATCTTACTCATATGCTGATTCAATGATTGCATCAAGA GCAGAAGAAGCTGGAAAGGCCAATTGCTCAAGTTATATGGTGGAAATGGCTTGGGTAAAA GAAGTGTATGGTGTAAGCACAGCAGAAGCAATGGAACTCTTGGAGCACTTTTTGGCTATG AATCCAGACAGCGATGGACGTGTTAAAGCACAAGATTTTTGGGCTCTTTTTGGCCTAGAT TGCAGTCCTCTATGCAAGAAGATATTTCACTACTTCGATTTTGAAAATAAGGAA
Homology of Contig U35_16681 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g49790.1 | 557 | 1e-125 | protein|acyltransferase, putative, expressed |
| Brachypodium v1_2 | Bradi1g34970.1 | 541 | 9e-137 | |
| Arabidopsis v10 | AT2G45670.1 | 539 | 1e-78 | calcineurin B subunit-related | chr2:18815070-18818382 REVERSE LENGTH=539 |