barSeed - Barley Seed Development Database

Probe CUST_28325_PI390587928

Source Contig U35_16683

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28325_PI390587928	Hv_44K_v2	TTATGGGAGTATGGGCTAAGATGTTCAAAATGTTTTATCCGGTGCTTGTTCTGTTCTAAA	1406	GeneList: yellow MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.610	2.707	1.248	0.841	0.340	0.365
Raw	1720.237	2781.397	1126.340	1200.844	165.826	199.186

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60000.1	4304	7e-23	2398 - 2454	100	57 / 57	plus	ABC07752
MLOC	MLOC_60000.2	4232	7e-23	2398 - 2454	100	57 / 57	plus	ABC07752
MLOC	MLOC_59999.1	4399	7e-23	2353 - 2409	100	57 / 57	plus	ABC07752
JLOC1	JLOC1_39096.1	2455	4e-23	1694 - 1750	100	57 / 57	plus
Harvest21	ABC07752	1869	3e-25	1796 - 1855	100	60 / 60	plus	ABC07752
Harvest35	U35_16683	1480	3e-25	1407 - 1466	100	60 / 60	plus

Contig Sequence (1480 bp)

>U35_16683 1480 Hv_44K_v2
GGGTAAATGTGACTGAGATAAACAAGATTGTTTCTTTAGTTAATGAAACAAAAGCTTCTT
CTCGTCGAGGAGGGTTTGAAGTGGGCCAGACTGTTATTGTTGGTAAAAGACCACTGAAGG
GTCATGGAAGCGTAATTATTCAGCTGGGAATTCCTATCATTGAAGGCCCTCTTGAGGATG
AAAATCAAAGAGAGACAAGGGTGGAGCCTGTTCCTGGGATGCTGCATGATCTGTTTGATC
GCTTCTTTCGGCAGGGAATTGTACCTTCTAAGCCAGACTATTGTGTTGTCGACTTCTACT
GTGAGGAGGAATATTCTCATCCCCAGCAACCTCCATCTTGGTATGGTAGACCACTTTGTA
CCCTCTGCCTCACAGAGTGTGATATGGTGTTTGGCCGAGTTATCTTTGGAGAACGAGGTG
ATAACAGAGGCCCTTTGAAGCTCTCTCTCTCTACAGGGTCTCTTGTAGTGTTGCAAGGGA
GAAGTGCTGATGTAGCCAAGCGAGCTATTCCTGCTACACGGAAGCAGCGAATCCTTCTAA
CTTTCGGGAAGTCTGTGGCAAGAAAACTTGCACCATTGGAAAGTGCTTCACGGCCTACTG
CCCCGTTAACACCTCCTGCTATGCCCTGGGGTCCACCATCAAGGCCAGCTAACGTGAGGC
CACATTCCCCAAGTCCGCAGCACTTTGGATACACCCCAACCAGCAGCGTACTTCCAGCAC
CAACAATTGGACCTCATCACATCCCTCCATCGGATGGAATGCAGCCACTCTTTGTAGCAC
CTGCTCCTGTTGCTGCCGCAGCCATACCTTTCCCAGCAGCTGTTCCCTTGCCAAATGCAA
CGGCAGCTTGGATGCCAGAAGCCGCCCCAAGGCCTGCCCCACCTCGATTCCCTGTTCCAG
GCACAGGTGTCTTCCTTCCTCCTGGATCAGGACACCAGCTGCCCCATCAGATGATACAAG
CTTCCCATGCTCATGTGGAACCGAACTCTCCAAGAGGTTCAGCAGCTTATGTGGCTAATG
GTAGTGCTTCTCCAAAGAGCTCAGGAACAACAAAAAGGGCTGATACAATCGAGGCAAAAC
CAGAGTGCAATGGGAGCTCTAATTCTGTGGGTGAGCAGCAGCAGAACGGTGGGATGAAGA
ATGGTGGGCTCAGCAAGGTTGAGCCAAGTGCCTCTAAATAGAAGGGAGGTATAGTACATA
GAGAAGAAAAACATGAGACGAGGAAACTTCATTTTTCCAGGTCATGATTGCGGGCAACTC
TCTTATCCTTGACAAATGACACGAGTACAAGTGCCCTTGATGCCATGGAATTGTCTTGAG
AATGAAAGCCGTCTTAAATTTTGTAGCCGCTCTGTAGCAAAACTGGATATATCATGCTGC
TTTAATCTATCACCTGCTTGCTACAATTATGGGAGTATGGGCTAAGATGTTCAAAATGTT
TTATCCGGTGCTTGTTCTGTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16683 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13560.1	659	1e-164	protein\|hydroxyproline-rich glycoprotein family protein, putative, expressed
Brachypodium v1_2	Bradi1g68600.1	670	0.0
Arabidopsis v10	AT1G14710.1	601	2e-52	hydroxyproline-rich glycoprotein family protein \| chr1:5062168-5064697 REVERSE LENGTH=601