barSeed - Barley Seed Development Database

Probe CUST_28323_PI390587928

Source Contig U35_16684

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28323_PI390587928	Hv_44K_v2	GTGTAATATGCTTCCTGGCAACGTTCCTGAATTTTGAAATGCATTTTTGTCGCTGCTCTC	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60503.1	341	2e-24	6 - 65	100	60 / 60	minus	ABC06112
MLOC	AK373242	680	2e-23	621 - 678	100	58 / 58	plus	ABC02584 ABC06112
JLOC1	JLOC1_39465.2	758	8e-25	668 - 727	100	60 / 60	plus
JLOC1	JLOC1_39465.1	709	8e-25	619 - 678	100	60 / 60	plus
Harvest21	ABC06112	700	3e-25	608 - 667	100	60 / 60	plus	ABC06112
Harvest21	ABC42946	463	6e-22	18 - 71	100	54 / 54	minus
Harvest35	U35_16684	693	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_16684 693 Hv_44K_v2
GATAAATCCAGATCCAACTACCACCGCTTGACCTCTCTCCCGCAACCCATAACCGCGCCG
TCGCCGCCGCCGCCGCACCCGTCCGTCTCCTCCCTCCACCGAGTAGTGTCCCAGTTTCCC
TCCAGTCCCCATTATGCAGAACGAGGTGGGTGAGATGGTGGACCTCTATGTCCCAAGGAA
GTGCTCTGCCACCAACAGGATCATAACTGCCAAGGACCATGCCTCTGTCCAGATCAACAT
CGGGCATGTGGATGAGAATGGACTGTATAATGGCACCTTCACAACATTTGCTCTCTCTGG
ATTCGTCCGCGCCCAGGGCGATGCCGATGGTTCTTTGGACAGGCTCTGGCAGCAGAAGAG
GGCTGAGATCAAGCAGTAGATGAGTTCCGCGGAAGATTTTGCTAGGATAGATATTTATGA
AACCACTTTAAACCTTTTTTGAGGAATCTGTTATGGGTGTTTATGCTTTGCCTATGAATG
GTCTATGATAAAACCGTGGACTGCACGTAGTGCTTATGGAAACCTTGCTTGAAGAATCAT
TATATCTAGAATCATTATATCTTTGACCATGAATGGTCTATGTTTCTAAGATGAAACACT
AGACTCGGTGTAATATGCTTCCTGGCAACGTTCCTGAATTTTGAAATGCATTTTTGTCGC
TGCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None