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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_28322_PI390587928Hv_44K_v2TATTCTGTATATGTTCCGGACCTATATAAGGGCGTGTTTTCGTCCAGAAACGAGAAAAAA1932GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1610.2310.8241.4541.1821.661
Raw 75.416176.181552.4171480.388432.475657.867



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35821921062e-241955 - 201410060 / 60plus ABC06110
JLOC1JLOC1_40601.321498e-251989 - 204810060 / 60plus
JLOC1JLOC1_40601.218888e-251728 - 178710060 / 60plus
JLOC1JLOC1_40601.118928e-251732 - 179110060 / 60plus
Harvest21ABC0611020636e-221933 - 19939759 / 61plusABC06110
Harvest35U35_1668520653e-251933 - 199210060 / 60plus



Contig Sequence (2065 bp)

>U35_16685 2065 Hv_44K_v2
CGCACCCGCACTCCTCCGGTCCGGCGCACGCGCCTCCTCCGCATCGAGCACCACCCAACC
CGCCGCACGCGCAGCTCCCGACCTCGACCGCGCGCCACGGCGGCGAGCCATGGCGTTCCT
CTTCGGCGCCTTGCTGGGCCTGGTGCTCGGCGTCGGCGTCGTCATGGCGTTCGCGCGCCT
CGAGAATTCCCGCGCCGAGCAGCGCCGCGAGCTGGCTGCTACAGTTTCATCTTTCTCAAA
ATTGACTGTTCAAGATCTGAAGACACTTATTCCTACTGAGTCCTATCCATCGTGGGTATC
TTTCACCCAAAAGCAGAAGCTTAAATGGCTGAATCAAGAATTGGTGAAAATCTGGCCATT
TGTCAATGAGGCTGCATCGGAACTGATAAAATCTTCTGTGGAGCCTGTATTCGAGCAGTA
CAAGTCCTTCATTTTGGCCTCCATCCATTTCTCGAAGTTGACACTTGGTACTGTCGCTCC
TCAGTTTACAGGAGTTCAAATTCTGGATAGTGATAGTGCTGGTATTACTATGGAGCTTGA
TATGCAGTGGGATGGTAATCCCAACATAGTACTTGACATTCAAACAACTCTGGGAATTTC
ACTTCCTGTACAGGTGAAAAATATTGGATTCACAGGCACACTACGGCTACTCTTTAAGCC
TCTGGTAGCCGAACTCCCATGCTTTGGAGCTGTTTGCGTTTCTTTGAGAGAGAAGAGCAA
GGTGGATTTTACCCTCAAAGTTGTTGGTGGCGAAATGACAGCAATTCCTGGAATTTCTGA
TGCAATTGAGGGAACAATACGTGATACCATCGAGGACACACTGACATGGCCTAATCGCAT
AATTGTCCCCATTGTGCCAGGAGATTATAGTGATCTGGAGCTAAAACCTGTTGGATTATT
AGAAGTAAAACTTGTGGAAGCTAGGGATTTGAAGAACAAGGACCTCGTTGGGAAGTCTGA
CCCTTTTGCTGTGCTATACATACGCCCACTGAGTGCAAAAACGAAGAAAAGCAAAACAAT
AAACAATGATTTGAACCCCATCTGGAATGAACACTATGAATTTGTGGTCGAGGACTCATC
TACCCAGCACCTGACTGTGAAAATTTACGACGATGAAGGGCTCCAGCCGTCAGAGATTAT
TGGCTGCGCTCGTGTAGACTTATCGGATATCATGCCTGGAAAGGTCAAGGATGTTTGGTT
GGAACTTGTGAAAGACCTGGAAATTCAGCGTGATAAGAAACCTCGTGGTCAGGTCCACCT
AGAGCTCCTATACTACCCTTTTGATAAACAAGAAGGAGTTTCCAATCCTTTTGCTAGTCA
GATCCAGTTAACTTCTTTGGAAAAGGTCCTCAAGACGGAATCTAATGGATATGATGTCAA
CCAGAGGAAGAATGTTATTACGAGAGGAGTCCTTTCAGTAACTGTTATATCTGCAGAGGA
CATACCAGCAATGGATGTGATGGGGAAGGCTGACCCATTTGTGGTCCTGTACCTGAAGAA
GGGGGAAACCAAAAAGAAGACAAGGGTTGTGACTGAGACATTGAATCCGATATGGAATCA
GACATTTGATTTTGTAGTAGAAGATGCCCTGCATGATTTGCTTATGGTGGAAGTATGGGA
CCATGATACATTTGGAAAGGATTACATAGGGAGATGCATCTTGACACTTACCAGAGCGAT
ACTTGAAGGTGAGTTCCAAGATACATATGCGCTGCAAGGTGCTAAATCTGGAAGGCTGAA
CCTGCACTTCAAATGGACGGCACAGCCAATTTACCGTGATCGTGACAGGGATCAGTGAAA
CCTGTGTAACTTCACACGATAAGACTGCCTCTTCCTCTACGATGCATGTATATTAGCATT
TACACGGATCCGCTTGGGTCTTGTAAGTTGTAACCGTGTATAGGGGTTACTTTGTGATTA
GTCATAAAATATTATTCTGTATATGTTCCGGACCTATATAAGGGCGTGTTTTCGTCCAGA
AACGAGAAAAAAAAAAAAAAACGGTGCTGTCGCTCGTGTGCAACTCTCGCGGGCAGCAGC
TACTGCTCGCTAGCTTGGGTCGCTG



Homology of Contig U35_16685 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g55220.15760.0protein|C2 domain containing protein, expressed
Brachypodium v1_2Bradi3g20060.15280.0
Arabidopsis v10AT1G05500.15600.0| Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1625098-1628940 FORWARD LENGTH=560