barSeed - Barley Seed Development Database

Probe CUST_2831_PI390587928

Source Contig U35_22824

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2831_PI390587928	Hv_44K_v2	ATTTTTCTTCGACTTCAGCCTGACGTATGTCGGCGCCGGGATGATCTGCTCGCACCTCGT	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370608	1956	2e-24	1068 - 1127	100	60 / 60	plus	ABC39707 ABC41237
MLOC	MLOC_2378.2	929	2e-24	624 - 683	100	60 / 60	minus	None
MLOC	MLOC_2378.3	1392	2e-24	553 - 612	100	60 / 60	minus	None
MLOC	MLOC_2378.1	1304	2e-24	626 - 685	100	60 / 60	minus	None
MLOC	MLOC_2378.4	1236	2e-24	553 - 612	100	60 / 60	minus	None
JLOC1	JLOC1_1430.1	1305	8e-25	620 - 679	100	60 / 60	plus
Harvest21	ABC17042	539	3e-25	336 - 395	100	60 / 60	plus
Harvest35	U35_22824	525	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (525 bp)

>U35_22824 525 Hv_44K_v2
AACGTGCCGGGGAGCTACAAGGAGCCCGGCATCGGCTGGATGATGGGCTTCCTCCTCGCC
ATCAGCTTCGTCGGCCTCCTCACCCTGCTCCCCCTCAGAAAGGTACTGGTGATCGACTAC
AAGCTAACCTACCCAAGTGGGACTGCCACTGCCGTGCTCATAAACGGATTCCACACACCT
CAAGGAGATAAGAATGCAAGGCAGCAGGTCCGTGGGTTCCTCAAGTACTTTGGGATCAGC
TTCTTCTGGAGCTTCTTCCAGTGGTTCTACACCGGCGGCGACTTCTGTGGGTTCCTCCAA
TTCCCCACCTTCGGGCTCAAAGCCTGGAAGCAAACATTTTTCTTCGACTTCAGCCTGACG
TATGTCGGCGCCGGGATGATCTGCTCGCACCTCGTCAACCTCTCTCTCCTCTTCGGCGCC
GTCCTCTCCTGGGGCGTAATGTGGCCGCTCATGAGCAAGCAGGAGGGGAAGTGGTACTCG
GCTAAGGCGTCTGCCAGCAGCATGACAGGCCTGTACGGCTACAAG

Homology of Contig U35_22824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45900.1	676	6e-102	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g17230.1	675	3e-103
Arabidopsis v10	AT5G24380.1	664	3e-79	\| Symbols: YSL2, ATYSL2 \| YELLOW STRIPE like 2 \| chr5:8324098-8326525 FORWARD LENGTH=664