barSeed - Barley Seed Development Database

Probe CUST_28318_PI390587928

Source Contig U35_16687

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28318_PI390587928	Hv_44K_v2	CTGGTTCATAGAATAAAACAAGGGGTTAGCTTCTCGCTTAATATCATGCTGTGGGCTTTG	956	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9980.1	1460	2e-24	1357 - 1416	100	60 / 60	plus	ABC05962
JLOC1	JLOC1_6495.1	1476	8e-25	1366 - 1425	100	60 / 60	plus
Harvest21	ABC05962	1017	3e-25	957 - 1016	100	60 / 60	plus	ABC05962
Harvest35	U35_16687	1016	3e-25	957 - 1016	100	60 / 60	plus

Contig Sequence (1016 bp)

>U35_16687 1016 Hv_44K_v2
GTTCCCCGCCTTCTCTCTCTGCGGCAGCAATAAAAATAAAATAAATCTCGCGCAGGCACA
GGGAGGAGGACGACGCACGCACCGTCACAAGCAGCTCAATCTCTTTCTCCTTTTCTTTTC
TCTGCCTCCTCCCTTATCCCCACGCCCAGGAGACGCGTCTCCGGAGGAGAAAGGAAAGAT
TTCATCTTTTTTGCCCCCAAGATGTCCTCCCCAAGCAAGCGCCGCGAGATGGACCTCATG
AAGCTGATGATGAGCGACTATAAGGTGGAGATGGTGAACGATGGGATGCAAGAATTCTTC
GTGGAATTCCGAGGGCCTACTGAAAGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTA
GAACTGCCTGATGCATATCCTTACAAATCTCCGTCAATTGGTTTCATTAATAAGATTTAT
CACCCGAATGTGGATGAAATGTCTGGTTCGGTATGTTTAGATGTTATCAACCAGACATGG
AGCCCAATGTTTGATCTAGTAAATGTGTTCGAAGTCTTCCTTCCACAACTTCTGTTGTAC
CCAAATCCGTCTGATCCATTAAACGGAGAGGCTGCTGCGCTTATGATGCGAGATCGCCCT
GCTTATGAACAAAAAGTGAAAGAATTTTGTGATAAGTATGCGAAACCAGAGGATGCTGGC
ATAACCCCAGAAGACAAGTCTAGTGACGAAGAGGAGCTTAGCGAAGACGAAGATGACTCC
GGCGATGAGGATATAGTGGGCAAACCAGATCCTTAGTCACTGCCACAACCCGTTGTATAC
AATTTTGGTTGCAAAATTTGCAATCAAATTGATCCAGAAAATCTGGGAAAGAGAACTTTG
TATGTCATGTAAATAAGTGTACTTGTATCTTATCCAATGTTGTTTTCTTCAGTTTGACCA
ATTGAATTTGCAGCATTGCATACATTTGCGCCTGTCCGTCTTTGTAGATCTGTGATCTGG
TTCATAGAATAAAACAAGGGGTTAGCTTCTCGCTTAATATCATGCTGTGGGCTTTG

Homology of Contig U35_16687 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31000.1	184	2e-109	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi3g27780.1	185	3e-112
Arabidopsis v10	AT1G63800.1	185	7e-99	\| Symbols: UBC5 \| ubiquitin-conjugating enzyme 5 \| chr1:23667888-23669003 REVERSE LENGTH=185