barSeed - Barley Seed Development Database

Probe CUST_28317_PI390587928

Source Contig U35_42950

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28317_PI390587928	Hv_44K_v2	CGAGATGCAAACCCCTGGAACAATTTATACTTCACACACAGGGTCTACTATGTCCAGGAA	412	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.221	1.041	2.464	1.416	0.468	0.332
Raw	25.731	34.397	72.211	67.645	6.581	4.890

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2171.2	1365	2e-24	820 - 879	100	60 / 60	minus	ABC19539
MLOC	MLOC_2171.3	1526	2e-24	745 - 804	100	60 / 60	minus	None
MLOC	MLOC_2171.1	2245	2e-24	1467 - 1526	100	60 / 60	minus	ABC10197 ABC19539
JLOC1	JLOC1_1307.2	1898	8e-25	749 - 808	100	60 / 60	plus
JLOC1	JLOC1_1307.1	1654	8e-25	511 - 570	100	60 / 60	plus
Harvest21	ABC38989	611	3e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_42950	611	3e-25	413 - 472	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_42950 611 Hv_44K_v2
GAGGTTTTGCGGAGAGCACCGGGTCCAACGAGCAGCTGCTTGCAGACGGAGATGACACTG
ATGAGGAGCTTAGGCGAGAGGCAGATTACCTCAAGTTGTATGGCACAATATCGCAAACCC
CGGCTGAACTTCGAAATGTGTCATATGAAAGTAATTCTGAATCCGCTAATGAGTCTGATG
ACATGTCCATCAATGGACTTGCAATGGGAGCAACATCTTTATCTGGATTTAATTCGTCCG
AACGCTCAAAATGTGAGGAGGATCTGATGACTGAACTTGAAGTTTCACAAGACAAATTAC
TTGATTCTGTCCCTCGATCAGTTCTCCATGATAAGTCCCCATTCTGGAGAATGCAAAATA
GGTTGTCTGACTGCAACGGTTCACCCTTCCCGACACCTTTGGTTCTCNNNNACGAGATGC
AAACCCCTGGAACAATTTATACTTCACACACAGGGTCTACTATGTCCAGGAAGCGTGTGC
GCACCCGCAAGCAGTTTGTCTATCCTGNNNTGAGACCGATTGAGAACAAGCTTCAGCAAA
CGGAACTGCCAGAAGATTCTTCACCAATGCTGCCCTCCAGCAGTCCTAAGCATATCAGGA
AACTGCAGCAG

Homology of Contig U35_42950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g32360.1	363	1e-52
Arabidopsis v10	None