barSeed - Barley Seed Development Database

Probe CUST_28316_PI390587928

Source Contig U35_16688

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28316_PI390587928	Hv_44K_v2	TGTTCATTTGCCCTGGAGCATCTTCGCAATTTGGTGAATTTAAGTACAGTATATTTTTTC	345	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.433	0.730	1.448	1.755	0.824	1.421
Raw	12.341	34.547	56.519	113.624	18.017	34.116

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17342.1	1655	2e-24	1031 - 1090	100	60 / 60	minus	ABC05962
JLOC1	JLOC1_11971.4	1604	8e-25	376 - 435	100	60 / 60	plus
JLOC1	JLOC1_11971.1	1052	8e-25	353 - 412	100	60 / 60	plus
Harvest21	ABC05963	779	3e-25	346 - 405	100	60 / 60	plus
Harvest35	U35_16688	779	3e-25	346 - 405	100	60 / 60	plus

Contig Sequence (779 bp)

>U35_16688 779 Hv_44K_v2
CTCCCTGTTCCCCGCCTTCTCTCTCTGCGGCAGCAATAAAAATAAAATAAATCTCGCGCA
GGCACAGGGAGGAGGACGACGCACGCACCGTCACAAGCAGCTCAATCTCTTTCTCCTTTT
CTTTTCTCTGCCTCCTCCCTTATCCCCACGCCCAGGAGACGCGTCTCCGGAGGAGAAAGG
AAAGATTTCATCTTTTTTGCCCCCAAGATGTCCTCCCCAAGCAAGCGCCGCGAGATGGAC
CTCATGAAGCTGATGATGAGCGACTATAAGGTGGAGATGGTGAACGATGGGATGCAAGAA
TTCTTCGTGGAATTCCGAGGGCCTACTGAAAATGAATTGCTCGCTTGTTCATTTGCCCTG
GAGCATCTTCGCAATTTGGTGAATTTAAGTACAGTATATTTTTTCTATTGTATGGAAAGA
GCGGCTATATTTCTAATCAATTGTGGATGTGTTCTAAATTTGATAGGTATTTATCAAGGT
GGTGTCTGGAAGGTTAGAGTAGAACTGCCTGATGCATATCCTTACAAATCTCCGTCAATT
GGTTTCATTAATAAGATTTATCACCCGAATGTGGATGAAATGTCTGGTTCGGTATGTTTA
GATGTTATCAACCAGACATGGAGCCCAATGTTTGATCTAGTAAATGTGTTCGAAGTCTTC
CTTCCACAACTTCTGTTGTACCCAAATCCGTCTGATCCATTAAACGGAGAGGCTGCTGCG
CTTATGATGCGAGATCGCCCTGCTTATGAACAAAAAGTGAAAGAATTTTGTGATAAGTA

Homology of Contig U35_16688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31000.1	184	7e-93	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi3g27780.1	185	5e-93
Arabidopsis v10	AT1G63800.1	185	1e-87	\| Symbols: UBC5 \| ubiquitin-conjugating enzyme 5 \| chr1:23667888-23669003 REVERSE LENGTH=185