barSeed - Barley Seed Development Database

Probe CUST_2830_PI390587928

Source Contig U35_22825

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2830_PI390587928	Hv_44K_v2	TGTTCTTGAAACAGCTAGCTGGCGCTATAATAAACTGCTCTTGCAGCATTTCATAAAAAA	532	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.276	0.216	0.494	1.874	2.069	3.385
Raw	17.218	21.482	43.989	258.566	96.469	178.701

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71658.1	731	9e-22	108 - 162	100	55 / 55	minus	ABC26000
MLOC	MLOC_71657.3	2519	9e-22	1755 - 1809	100	55 / 55	minus	ABC18266 ABC26000
JLOC1	JLOC1_47638.1	730	5e-22	570 - 624	100	55 / 55	plus
JLOC1	JLOC1_47637.2	2517	5e-22	1804 - 1858	100	55 / 55	minus
JLOC1	JLOC1_47637.1	2507	5e-22	1794 - 1848	100	55 / 55	minus
Harvest21	ABC26000	586	6e-22	1 - 54	100	54 / 54	minus	ABC26000
Harvest35	U35_22825	597	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_22825 597 Hv_44K_v2
CGGCACCGCACCGCAGGAGGATGAGGCTGCTGGGCAGACACGTCTCCCCGCGGCAGATCG
TGCTGCTCGCCGCAGGGCTGGTGTTCTTTGGGGCGACGACGTACGACGTGCACCGCTCCA
TCAAGAACAACGACCAGCCCCCGACCAGCGAGCAGGTGGCGGCGCTCCAGGCCTTCATCG
ACTCCAGGAAGCGCTAGTCAGGGGCGGCCGCCGGCACCGATGCCCCGTCGATTCCCCTCA
GCGAGCGGCGGGGCGGCGCGGTGCATATGCTTGTGATGATCTCTGTCGATCTGTGGAGCG
TTCGTCTGAAGCAATAAGAGCGGCCATGCCATGGATGTGTTCGACATTATTATTCCCCAA
AGGAGGAACTGGGTGGTGCGTACTATGGATGTATGTATATAGACCGTACAGCCAGGTGAT
GCAAATCCCGTTTCTCCCATGTTGCATCACCAACCAAACCTAACCTTCGATTCCTAGCAG
AGGCAGGCTGAAGAATCTAGTAGTAGAATGTGTACACTGGTCATGTCGACTCTGTTCTTG
AAACAGCTAGCTGGCGCTATAATAAACTGCTCTTGCAGCATTTCATAAAAAAAAAAA

Homology of Contig U35_22825 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None