barSeed - Barley Seed Development Database

Probe CUST_28295_PI390587928

Source Contig U35_16690

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28295_PI390587928	Hv_44K_v2	CTTGAAGCCATACATCATTCCAAAACCAGAAGTTACAGTTGTTCCTCGGGCAAAAGATGA	1077	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.494	1.005	1.383	1.554	0.810	0.883
Raw	30.310	98.356	114.827	209.685	37.689	44.805

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362128	1559	2e-24	1076 - 1135	100	60 / 60	plus	ABC09099
MLOC	MLOC_19687.1	1757	2e-24	1026 - 1085	100	60 / 60	minus	ABC09099
MLOC	MLOC_19687.2	2840	2e-24	992 - 1051	100	60 / 60	minus	ABC09099
MLOC	MLOC_19686.5	7649	2e-24	5804 - 5863	100	60 / 60	minus	ABC09099
MLOC	MLOC_19686.6	7809	2e-24	5964 - 6023	100	60 / 60	minus	ABC09099
JLOC1	JLOC1_13644.1	1702	8e-25	675 - 734	100	60 / 60	plus
JLOC1	JLOC1_13643.6	4066	8e-25	2220 - 2279	100	60 / 60	minus
JLOC1	JLOC1_13643.5	7465	8e-25	5619 - 5678	100	60 / 60	minus
JLOC1	JLOC1_13643.4	7426	8e-25	5580 - 5639	100	60 / 60	minus
JLOC1	JLOC1_13643.3	7430	8e-25	5584 - 5643	100	60 / 60	minus
JLOC1	JLOC1_13643.2	7650	8e-25	5804 - 5863	100	60 / 60	minus
JLOC1	JLOC1_13643.1	7682	8e-25	5836 - 5895	100	60 / 60	minus
Harvest21	ABC09099	1577	3e-25	1078 - 1137	100	60 / 60	plus	ABC09099
Harvest35	U35_16690	1577	3e-25	1078 - 1137	100	60 / 60	plus

Contig Sequence (1577 bp)

>U35_16690 1577 Hv_44K_v2
CGCGCGCGCGCTCCACACCATCATCCATCCTCCTCGTCCTCCCCCCACCCCCACCCTCCT
CCCTCAGCTCCACCCACCATTCTTCCCGCGCCTAGCAGCAGCCCAGCCCCTATAGCTGCC
CCCCTCCCGGACCCCTCCGGCGCGGGTCTGTCTCTGGCCGCTTTCTTTCTTTCTTTCTCG
GGCGAGTCGGCGGCCGCTGTCTTTCCTTTTTCGGTTCACGGGGCCGGCGGGCGGAGGTTC
TGTAGCGTCCGGGATGGCGGCTGCTGCGGCGATCTGCGGGGAGGACGAGCCGGCGCCGCG
CGATCCGGCCGCGGCGGCCGAGTGCGCGGCGGCGGGCGGCGGGGTCGAGCGGCTGGATCT
CGGGGACGGGCGGGCGGCGCTCGTGGCGGGGGGCAAGAGGAGCGTCTACCTCATGGAGTG
CGAGCCGGTCTGGGGCTGCGTCGCCACGCCGGGACGCGGCGGGGAGATGGAGGACGCCTG
CGCCGCCGTGCCCCGCTTCGCCGACGTGCCCGTGCGCCTGCTCGCCCGGCGCCAAGACCT
CGACGGGCTCGGGCTCGACGCCGACGCGCTCCGCCTCCCCTCCCACCTCTTCGCCGTCTT
CGACGGCCACGGCGGCTCCGAGGTGTCCAACTACTGCCGGGAGAGGCTCCACGTCGTGCT
GAGCAAGGAGCTGAGGAGGCCCCCCAAGGATCTGGGGGAGATGAGCGATGTGGACATGAA
GGAGCACTGGGACGACCTCTTCACCAAGTGTTTCCAGACAGTGGATGACGAGGTGTCGGG
GCTTGCAAGCAGGCTTGTCGACGGTGAGCCCCGGTTAGAGCCGATCGCCGCGGAGAACGT
GGGGTCGACGGCGGTTGCAGTGGTGGTCTGCTCCTCTCATGTAGTGGTGGCCAATTGTGG
CGATTCACGCATCGTGCTCTCGCGCGGGAAGGAGCCTGTTGCTCTCTCAATTGATCAGAA
GCCTGACAGGAAGGATGAGCGCGCGAGGATTGAGGCTGCGGGAGGCAAGGTCATCCAATG
GAATGGACACCGAGTGTCCGGGATACTTGCTATGTCACGATCCATTGGTGACCGATACTT
GAAGCCATACATCATTCCAAAACCAGAAGTTACAGTTGTTCCTCGGGCAAAAGATGATGA
TTGTCTCATTCTGGCAAGCGACGGGCTTTGGGACGTCGTGTCGAATGAAGAGGCGTGTAA
GGTTGCACGTCGGCAAATCCAGCAGTGGCACAAGAACAACAGCGTTACAACATCATCGTC
AGATGGAGGCGATGGATCCACCGATCCTGCCGCGCAGGCAGCTGCTGACTATCTCGTGAG
GCTGGCGCTGAAGAAAGGAAGCCAGGATAACATCACTGTAATTGTGGTCGACTTGAAACC
CCGGAGGAAATCCAAGAATAATTCCTAACATGACTTGAATTCATCATACTAGTAGTCGGT
CTTCTAATGAGACTTGACCCACCTTTTTCGTTGGGTTTCAAGAATTGTACATGTATATGC
TAGATGGATTTTCAACCTAGTGGGTTATAATGATTAATTAATCATATCCTCGTTTTGGTT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_16690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46040.1	388	2e-166	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi2g18510.1	375	0.0
Arabidopsis v10	AT1G72770.1	511	1e-101	\| Symbols: HAB1 \| HYPERSENSITIVE TO ABA1 \| chr1:27390998-27392851 FORWARD LENGTH=511