- Probe CUST_28276_PI390587928
- Source Contig U35_42963
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28276_PI390587928 | Hv_44K_v2 | CGGGAGAGGTTACTTGCTTCTTCCTTTCAGGATTCTTCAAAATTTCTTGTACTATCACTC | 496 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.905 | 1.207 | 1.135 | 0.701 | 0.635 | 0.397 |
| Raw | 234.526 | 207.738 | 191.924 | 168.267 | 57.749 | 40.553 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11755.2 | 4380 | 2e-24 | 2182 - 2241 | 100 | 60 / 60 | minus | ABC08687 |
| MLOC | MLOC_11755.3 | 2500 | 2e-24 | 374 - 433 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_11755.1 | 4233 | 2e-24 | 2200 - 2259 | 100 | 60 / 60 | minus | ABC08687 |
| JLOC1 | JLOC1_7827.2 | 3890 | 8e-25 | 1895 - 1954 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7827.1 | 4056 | 8e-25 | 1822 - 1881 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC39037 | 576 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42963 | 576 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus |
Contig Sequence (576 bp)
>U35_42963 576 Hv_44K_v2 GGACAGTGTGCTAACCGATGATTACAAAAGCTCAATGGATGAAGCAATTAGCATAGCTTT AGTCAATGATGAATTTGATCCTCTCATTGAGCTTATTTCTATAGAGCAGAACCCAGAAAT CTTCAACTACAAACATTCAGAGACTGGTGTGACACCTTTGATGGTTTTTGCCAGGAAGGG TCAGCTTGGGGATATCTGTATGCTTCTATCATTTGGTGTGGATTGTTCTGCACGGGATCA TGATGGAAAATCTGCGTTAGATTGGGCACAGCAAGAGAATCAGGAAGAGGCTTGTGAAGT TATTAAGAAACATATGGATTGTAGTCCTGCAAAATTACCTGAAGAAAACGAGCTGCTTAA GAAATACCTGGCAACTATGAACACAGAACACATTGATACTGTGCTGATAGAACGCTTGCT TAGAAAAATATGCACCGACTCCAAAGAAGGAGCTATCTTGGTCTTCCTTCCTGGTTGGGA AGATATAAATCAAACACGGGAGAGGTTACTTGCTTCTTCCTTTCAGGATTCTTCAAAATT TCTTGTACTATCACTCCATTCCATGATCCCATCTTT
Homology of Contig U35_42963 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g56190.1 | 1224 | 4e-103 | protein|HVT1, putative, expressed |
| Brachypodium v1_2 | Bradi2g51017.1 | 1196 | 4e-105 | |
| Arabidopsis v10 | AT2G30800.1 | 1299 | 7e-63 | | Symbols: HVT1, ATVT-1 | helicase in vascular tissue and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299 |